Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

34730 16 + 32615351 - 32615398 1 48

TTG ...

LSE ...

34732 1 - 43141659 - 43141790 1 132

TTG ...

LLP ...

34734 16 - 10966390 - 10966599 1 210

GTG ...

VPT ...

34736 16 + 32467159 - 32467224 1 66

ATG ...

MQD ...

34738 16 + 20686838 - 20686936 1 99

CTG ...

LER ...

34741 1 + 172097718 - 172097813 1 96

GTG ...

VRG ...

34743 16 + 20686880 - 20686936 1 57

CTG ...

LHQ ...

34745 16 - 4060749 - 4060826 1 78

CTG ...

LTR ...

34747 16 + 17641734 - 17641871 1 138

CTG ...

LGS ...

34749 16 + 23110100 - 23110138 1 39

TTG ...

LLL ...

34751 16 - 91583272 - 91583328 1 57

CTG ...

LNH ...

34754 16 + 57121770 - 57121883 1 114

TTG ...

LLS ...

34756 16 - 18807285 - 18807398 1 114

ATG ...

MTL ...

34758 16 + 22870929 - 22871042 1 114

TTG ...

LLS ...

34760 16 + 59475512 - 59475604 1 93

TTG ...

LHF ...

34762 1 - 155779169 - 155779321 1 153

CTG ...

LQV ...

34765 16 - 11224387 - 11224512 1 126

CTG ...

LKG ...

34767 16 - 11199381 - 11199464 1 84

CTG ...

LAK ...

34769 16 + 20692291 - 20692431 1 141

GTG ...

VKE ...

34771 16 - 84831325 - 84831438 1 114

GTG ...

VHL ...

34773 16 - 91587021 - 91587110 1 90

CTG ...

LII ...

34775 16 + 58732625 - 58732723 1 99

TTG ...

LMC ...

34777 16 + 22866904 - 22867005 1 102

TTG ...

LPV ...

34779 16 - 8424822 - 8424857 1 36

GTG ...

VLV ...

34781 1 - 178332143 - 178332301 1 159

GTG ...

VLP ...

34783 16 + 32620454 - 32620576 1 123

GTG ...

VKN ...

34785 16 + 92111770 - 92111925 1 156

GTG ...

VEN ...

34787 1 + 133365638 - 133365697 1 60

CTG ...

LRV ...

34789 16 + 33829713 - 33829751 1 39

CTG ...

LAA ...

34791 16 - 90727299 - 90727337 1 39

ATG ...

MSW ...

34793 1 + 63177147 - 63177230 1 84

CTG ...

LAA ...

34795 16 - 17842521 - 17842625 1 105

CTG ...

LLV ...

34797 16 - 84962796 - 84962861 1 66

TTG ...

LLK ...

34799 1 + 165478224 - 165478358 1 135

TTG ...

LVC ...

34801 16 - 17386222 - 17386275 1 54

GTG ...

VYW ...

34804 16 + 57121806 - 57121883 1 78

CTG ...

LPG ...

34806 16 + 10421649 - 10421690 1 42

CTG ...

LGK ...

34808 16 - 18807285 - 18807392 1 108

TTG ...

LRF ...

34810 16 - 56694385 - 56694450 1 66

GTG ...

VPS ...

34813 16 + 4650033 - 4650212 1 180

GTG ...

VGP ...

34815 16 - 85103202 - 85103273 1 72

CTG ...

LVQ ...

34817 16 - 4987454 - 4987576 1 123

GTG ...

VLP ...

34819 16 + 32620418 - 32620576 1 159

CTG ...

LEL ...

34821 16 - 17573277 - 17573387 1 111

CTG ...

LTT ...

34823 16 + 4648411 - 4648515 1 105

CTG ...

LAF ...

34825 16 + 29616666 - 29616695 1 30

CTG ...

LSQ ...

34827 16 + 20679854 - 20680051 1 198

GTG ...

VAP ...

34829 16 - 18811301 - 18811333 1 33

ATG ...

MPC ...

34831 16 + 20659406 - 20659594 1 189

GTG ...

VAG ...

34833 16 - 17926026 - 17926061 1 36

TTG ...

LKI ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5