Metam
ORF

Logo

ORF Browser

Selected

filters

Database

M.musculus

ORFs

No result matching criteria

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

34625 16 + 32422855 - 32422935 1 81

CTG ...

LCS ...

34627 16 + 20692357 - 20692431 1 75

GTG ...

VAL ...

34629 16 + 22862649 - 22862684 1 36

ATG ...

MTP ...

34631 16 + 20680718 - 20680813 1 96

GTG ...

VSV ...

34633 16 - 15862788 - 15862976 1 189

CTG ...

LLT ...

34635 16 + 20686889 - 20686936 1 48

CTG ...

LLC ...

34637 16 + 90225186 - 90225218 1 33

GTG ...

VWP ...

34639 16 - 32041464 - 32041520 1 57

ATG ...

MKT ...

34641 16 - 87490477 - 87490611 1 135

TTG ...

LVC ...

34643 16 + 32430962 - 32431030 1 69

TTG ...

LTS ...

34646 16 + 5234989 - 5235075 1 87

TTG ...

LQN ...

34648 1 + 172134228 - 172134290 1 63

CTG ...

LDA ...

34650 16 - 45742772 - 45742825 1 54

CTG ...

LSA ...

34652 16 + 17038399 - 17038455 1 57

CTG ...

LLD ...

34654 16 - 85120526 - 85120567 1 42

TTG ...

LAP ...

34656 16 - 90796298 - 90796432 1 135

CTG ...

LNH ...

34658 16 + 22868745 - 22868780 1 36

CTG ...

LAN ...

34660 1 + 151695753 - 151695818 1 66

CTG ...

LKG ...

34663 16 - 17573277 - 17573444 1 168

GTG ...

VYF ...

34665 1 - 155812529 - 155812651 1 123

CTG ...

LIR ...

34667 16 - 90795357 - 90795431 1 75

CTG ...

LMD ...

34669 16 + 32422897 - 32422935 1 39

ATG ...

MKC ...

34671 16 + 17639760 - 17639849 1 90

CTG ...

LSY ...

34673 16 - 90930990 - 90931067 1 78

GTG ...

VGG ...

34675 16 + 10174401 - 10174490 1 90

CTG ...

LAI ...

34678 16 + 36021572 - 36021652 1 81

CTG ...

LSD ...

34680 16 + 17764579 - 17764650 1 72

CTG ...

LVV ...

34683 16 + 37815749 - 37815814 1 66

GTG ...

VEL ...

34685 16 - 17842521 - 17842697 1 177

TTG ...

LDQ ...

34687 16 + 36031173 - 36031301 1 129

GTG ...

VID ...

34689 16 - 4001307 - 4001378 1 72

CTG ...

LWT ...

34692 16 + 4648309 - 4648515 1 207

CTG ...

LPV ...

34694 16 + 32898905 - 32898943 1 39

CTG ...

LID ...

34696 16 - 11201274 - 11201426 1 153

TTG ...

LPH ...

34698 16 + 34921611 - 34921658 1 48

GTG ...

VEE ...

34700 16 + 37822654 - 37822800 1 147

CTG ...

LEA ...

34702 16 - 18807285 - 18807359 1 75

ATG ...

MKQ ...

34704 16 + 34921605 - 34921658 1 54

GTG ...

VVV ...

34706 16 + 35022500 - 35022625 1 126

CTG ...

LQR ...

34708 16 - 17528622 - 17528693 1 72

GTG ...

VPI ...

34710 16 + 20683436 - 20683687 1 252

CTG ...

LKE ...

34712 16 + 4649952 - 4650212 1 261

CTG ...

LAV ...

34714 16 + 20692249 - 20692431 1 183

CTG ...

LLR ...

34716 16 + 22869427 - 22869477 1 51

GTG ...

VDG ...

34718 1 + 165461377 - 165461487 1 111

CTG ...

LLS ...

34720 16 + 36031212 - 36031301 1 90

TTG ...

LQT ...

34722 16 - 90799988 - 90800098 1 111

CTG ...

LAY ...

34724 16 - 59639027 - 59639113 1 87

GTG ...

VNR ...

34726 16 + 20687397 - 20687471 1 75

CTG ...

LRP ...

34728 16 - 15862368 - 15862472 1 105

CTG ...

LGS ...

Previous 302 Next

Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5