Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

34518 1 + 179678057 - 179678140 1 84

ATG ...

MRS ...

34520 16 + 37541876 - 37541956 1 81

CTG ...

LCH ...

34522 16 + 20679824 - 20680051 1 228

CTG ...

LAS ...

34524 16 + 92111809 - 92111925 1 117

GTG ...

VVR ...

34526 16 + 5235013 - 5235075 1 63

GTG ...

VKL ...

34529 16 + 91424911 - 91425123 1 213

CTG ...

LFS ...

34531 16 + 23110034 - 23110138 1 105

ATG ...

MLA ...

34534 16 + 38347069 - 38347161 1 93

GTG ...

VCA ...

34536 16 - 84831325 - 84831432 1 108

TTG ...

LKR ...

34538 16 + 38089549 - 38089593 1 45

ATG ...

MRA ...

34540 16 - 17927142 - 17927186 1 45

GTG ...

VVV ...

34542 1 - 93801649 - 93801897 1 249

GTG ...

VHA ...

34544 16 - 17926026 - 17926100 1 75

CTG ...

LEA ...

34546 16 + 32615255 - 32615398 1 144

CTG ...

LAE ...

34548 16 + 44140015 - 44140107 1 93

CTG ...

LSS ...

34550 16 - 90796298 - 90796456 1 159

GTG ...

VRF ...

34552 1 - 181203020 - 181203127 1 108

CTG ...

LEY ...

34554 16 + 18825763 - 18825819 1 57

ATG ...

MLP ...

34556 16 - 17842521 - 17842655 1 135

CTG ...

LED ...

34558 16 - 35438109 - 35438138 1 30

CTG ...

LPP ...

34560 16 - 57606662 - 57606796 1 135

CTG ...

LSP ...

34562 16 + 20680724 - 20680813 1 90

GTG ...

VPK ...

34564 16 + 18249948 - 18250037 1 90

GTG ...

VTP ...

34566 16 + 3923864 - 3923977 1 114

CTG ...

LLN ...

34568 16 - 15862788 - 15862904 1 117

CTG ...

LLV ...

34570 16 + 4650054 - 4650212 1 159

CTG ...

LEL ...

34572 16 - 17573277 - 17573348 1 72

CTG ...

LEE ...

34574 16 - 5247352 - 5247594 1 243

CTG ...

LYC ...

34576 16 - 45396955 - 45397212 1 258

TTG ...

LIV ...

34578 16 + 21434740 - 21434787 1 48

ATG ...

MTK ...

34581 16 + 20682045 - 20682272 1 228

CTG ...

LFR ...

34584 16 + 10174310 - 10174465 1 156

ATG ...

MAS ...

34586 16 - 90787317 - 90787424 1 108

CTG ...

LKS ...

34588 16 - 90727285 - 90727365 1 81

GTG ...

VRF ...

34590 16 - 45408852 - 45408944 1 93

GTG ...

VLR ...

34592 16 - 5021334 - 5021384 1 51

GTG ...

VTS ...

34594 16 + 32615249 - 32615398 1 150

GTG ...

VKL ...

34597 16 + 8831328 - 8831399 1 72

GTG ...

VSA ...

34600 16 + 35022476 - 35022625 1 150

TTG ...

LTW ...

34602 16 - 91587021 - 91587119 1 99

TTG ...

LFR ...

34604 16 + 20686799 - 20686936 1 138

TTG ...

LLF ...

34606 16 + 37831551 - 37831637 1 87

TTG ...

LQE ...

34608 16 + 20681444 - 20681596 1 153

CTG ...

LDP ...

34610 16 - 4768741 - 4768839 1 99

GTG ...

VCP ...

34612 16 + 20559675 - 20559758 1 84

GTG ...

VEQ ...

34614 16 + 23113169 - 23113210 1 42

TTG ...

LAE ...

34616 16 + 4650147 - 4650212 1 66

GTG ...

VPL ...

34618 16 - 85056297 - 85056479 1 183

TTG ...

LRK ...

34620 16 - 45742772 - 45742849 1 78

GTG ...

VSF ...

34623 16 + 22858072 - 22858113 1 42

CTG ...

LLL ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5