Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

34410 1 + 172318832 - 172318975 1 144

CTG ...

LHG ...

34412 16 - 17573277 - 17573393 1 117

TTG ...

LEL ...

34414 16 - 84831351 - 84831419 1 69

TTG ...

LVL ...

34416 16 - 84732404 - 84732475 1 72

GTG ...

VSG ...

34418 16 + 20683520 - 20683687 1 168

TTG ...

LKM ...

34420 16 + 20672818 - 20672874 1 57

GTG ...

VDY ...

34423 16 - 17528622 - 17528672 1 51

CTG ...

LWK ...

34426 16 + 18877274 - 18877366 1 93

ATG ...

MRL ...

34428 16 + 20692288 - 20692431 1 144

GTG ...

VVK ...

34430 16 - 84834765 - 84834851 1 87

GTG ...

VAA ...

34432 16 + 32615348 - 32615398 1 51

CTG ...

LLS ...

34434 16 + 20682069 - 20682272 1 204

CTG ...

LNK ...

34436 16 + 5236425 - 5236472 1 48

TTG ...

LVH ...

34438 1 - 151423526 - 151423597 1 72

ATG ...

MFP ...

34441 16 - 45408852 - 45408941 1 90

TTG ...

LRR ...

34443 16 + 92111743 - 92111925 1 183

GTG ...

VDF ...

34445 16 + 44157162 - 44157197 1 36

ATG ...

MPC ...

34447 16 - 15862788 - 15862898 1 111

GTG ...

VVL ...

34449 1 - 135125220 - 135125519 1 300

ATG ...

MLP ...

34451 16 - 65562471 - 65562536 1 66

CTG ...

LGR ...

34453 16 - 4065218 - 4065313 1 96

CTG ...

LVC ...

34455 16 - 17927142 - 17927210 1 69

CTG ...

LGA ...

34457 16 + 10174297 - 10174410 1 114

TTG ...

LVL ...

34459 16 + 20535533 - 20535595 1 63

CTG ...

LGA ...

34462 16 - 10963249 - 10963278 1 30

GTG ...

VAV ...

34464 16 - 35453447 - 35453476 1 30

ATG ...

MLC ...

34466 16 + 22870982 - 22871167 1 186

CTG ...

LWK ...

34468 16 - 5249341 - 5249424 1 84

TTG ...

LDA ...

34470 16 - 17302987 - 17303094 1 108

GTG ...

VEI ...

34472 16 - 17925813 - 17925848 1 36

GTG ...

VKL ...

34474 16 - 4068282 - 4068323 1 42

ATG ...

MSS ...

34476 16 + 17640963 - 17641085 1 123

GTG ...

VTD ...

34478 16 + 20687151 - 20687279 1 129

CTG ...

LYE ...

34480 16 + 4649077 - 4649112 1 36

CTG ...

LPG ...

34482 16 - 18811301 - 18811351 1 51

TTG ...

LWP ...

34485 1 - 143671326 - 143671370 1 45

GTG ...

VPL ...

34487 16 + 17638523 - 17638651 1 129

GTG ...

VLV ...

34489 16 + 5242554 - 5242607 1 54

GTG ...

VDM ...

34491 16 - 4770672 - 4770716 1 45

CTG ...

LNY ...

34493 16 + 91424881 - 91425123 1 243

CTG ...

LGH ...

34495 16 + 22009500 - 22009661 1 162

CTG ...

LAT ...

34497 16 + 20651802 - 20651855 1 54

GTG ...

VAR ...

34499 1 + 167309313 - 167309378 1 66

CTG ...

LGP ...

34502 16 - 84831351 - 84831416 1 66

GTG ...

VLQ ...

34504 16 + 36021518 - 36021652 1 135

CTG ...

LFV ...

34506 16 - 11228076 - 11228177 1 102

CTG ...

LGK ...

34508 16 + 35000390 - 35000560 1 171

GTG ...

VGM ...

34510 16 - 18872538 - 18872573 1 36

ATG ...

MRW ...

34513 16 - 4987454 - 4987552 1 99

GTG ...

VNL ...

34515 1 - 54990239 - 54990403 1 165

GTG ...

VLK ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5