Metam
ORF

Logo

ORF Browser

Selected

filters

Database

M.musculus

ORFs

No result matching criteria

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

34300 1 + 172319310 - 172319408 1 99

GTG ...

VPL ...

34302 16 - 17842521 - 17842619 1 99

GTG ...

VPP ...

34305 16 + 32902462 - 32902599 1 138

TTG ...

LTK ...

34307 16 - 4768741 - 4768887 1 147

GTG ...

VTV ...

34310 16 + 22857987 - 22858019 1 33

CTG ...

LVS ...

34312 16 - 4987743 - 4987790 1 48

ATG ...

MAH ...

34314 1 - 151471363 - 151471410 1 48

ATG ...

MAP ...

34316 16 + 57121819 - 57121875 1 57

GTG ...

VAP ...

34319 1 - 75501951 - 75502241 1 291

CTG ...

LVS ...

34321 16 - 11194400 - 11194678 1 279

TTG ...

LKK ...

34324 1 + 93479040 - 93479072 1 33

CTG ...

LTS ...

34328 16 + 33123578 - 33123622 1 45

CTG ...

LFP ...

34330 16 + 20552304 - 20552495 1 192

CTG ...

LNA ...

34332 16 - 4880210 - 4880284 1 75

CTG ...

LHD ...

34335 16 + 17452282 - 17452353 1 72

GTG ...

VRR ...

34337 16 + 33738246 - 33738287 1 42

TTG ...

LPG ...

34340 16 + 29618144 - 29618299 1 156

CTG ...

LWE ...

34342 16 - 84730415 - 84730465 1 51

ATG ...

MMS ...

34344 1 + 172134243 - 172134290 1 48

CTG ...

LSG ...

34346 16 - 10963327 - 10963395 1 69

ATG ...

MCS ...

34348 1 + 82587384 - 82587443 1 60

CTG ...

LLT ...

34350 16 + 32430932 - 32431030 1 99

ATG ...

MFP ...

34353 16 - 32041464 - 32041529 1 66

ATG ...

MMM ...

34355 16 + 13685067 - 13685132 1 66

ATG ...

MMH ...

34357 16 - 87491278 - 87491451 1 174

GTG ...

VQH ...

34359 1 + 59695989 - 59696114 1 126

CTG ...

LME ...

34361 16 + 22858057 - 22858113 1 57

CTG ...

LST ...

34363 16 + 20652269 - 20652304 1 36

ATG ...

MNW ...

34365 16 + 17640873 - 17641085 1 213

CTG ...

LFL ...

34367 16 + 92305324 - 92305368 1 45

CTG ...

LPL ...

34369 16 + 8843103 - 8843150 1 48

GTG ...

VER ...

34371 16 + 5235210 - 5235296 1 87

GTG ...

VYL ...

34373 16 + 90225171 - 90225218 1 48

CTG ...

LLE ...

34375 16 + 4648714 - 4648776 1 63

TTG ...

LTS ...

34377 16 - 32041464 - 32041496 1 33

TTG ...

LPL ...

34379 1 + 172133138 - 172133182 1 45

ATG ...

MAP ...

34382 16 + 17625744 - 17625893 1 150

CTG ...

LVE ...

34384 16 - 4060753 - 4060854 1 102

GTG ...

VGF ...

34386 16 + 20686784 - 20686936 1 153

CTG ...

LAS ...

34388 1 + 85905359 - 85905406 1 48

TTG ...

LVV ...

34390 16 + 20651683 - 20651895 1 213

GTG ...

VRA ...

34392 16 - 4065218 - 4065295 1 78

GTG ...

VLP ...

34394 1 + 156052090 - 156052125 1 36

GTG ...

VGT ...

34396 16 + 57121719 - 57121883 1 165

CTG ...

LAL ...

34398 1 + 37892960 - 37893010 1 51

CTG ...

LAG ...

34400 16 - 8424946 - 8425086 1 141

GTG ...

VGS ...

34402 16 + 20550641 - 20550691 1 51

CTG ...

LLR ...

34404 16 + 8843001 - 8843054 1 54

TTG ...

LEF ...

34406 1 + 45823420 - 45823515 1 96

TTG ...

LGE ...

34408 16 - 17302987 - 17303073 1 87

CTG ...

LQR ...

Previous 299 Next

Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5