Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

37826 17 + 29700235 - 29700285 1 51

GTG ...

VKE ...

37828 17 - 34030064 - 34030234 1 171

GTG ...

VGL ...

37830 1 + 134631292 - 134631402 1 111

TTG ...

LVS ...

37832 17 + 33919639 - 33919671 1 33

ATG ...

MKV ...

37835 17 + 35882527 - 35882562 1 36

CTG ...

LMR ...

37837 17 + 33911275 - 33911460 1 186

CTG ...

LRW ...

37839 17 - 64308968 - 64309084 1 117

CTG ...

LIR ...

37841 17 - 35667830 - 35667958 1 129

CTG ...

LLA ...

37843 17 + 27029646 - 27029822 1 177

GTG ...

VGG ...

37845 1 - 65016661 - 65016708 1 48

CTG ...

LVA ...

37847 1 + 172318796 - 172318975 1 180

GTG ...

VEL ...

37849 17 + 20958780 - 20958845 1 66

CTG ...

LMK ...

37851 17 - 28974542 - 28974601 1 60

TTG ...

LTF ...

37853 17 + 27029694 - 27029822 1 129

ATG ...

MGR ...

37855 17 + 25092810 - 25092986 1 177

GTG ...

VFF ...

37857 17 - 35835419 - 35835556 1 138

CTG ...

LST ...

37859 1 + 157412780 - 157412839 1 60

CTG ...

LVE ...

37861 17 + 34610616 - 34610648 1 33

GTG ...

VRG ...

37864 17 - 49471959 - 49472000 1 42

ATG ...

MNK ...

37866 17 - 35157344 - 35157460 1 117

GTG ...

VDP ...

37868 17 + 25050356 - 25050502 1 147

GTG ...

VCE ...

37870 17 - 70846168 - 70846392 1 225

TTG ...

LQH ...

37872 17 - 14956711 - 14956767 1 57

CTG ...

LGV ...

37874 1 + 172119494 - 172119610 1 117

GTG ...

VGL ...

37876 17 + 43568710 - 43568790 1 81

GTG ...

VLG ...

37878 17 + 28961429 - 28961467 1 39

ATG ...

MPL ...

37880 17 + 29282136 - 29282321 1 186

TTG ...

LVR ...

37882 17 - 35162198 - 35162299 1 102

CTG ...

LKA ...

37884 17 - 35834948 - 35835037 1 90

ATG ...

MPP ...

37886 17 + 36857939 - 36858082 1 144

CTG ...

LDY ...

37888 17 - 65593436 - 65593522 1 87

ATG ...

MIR ...

37891 17 + 12922659 - 12922736 1 78

GTG ...

VTM ...

37893 17 - 35667830 - 35667931 1 102

GTG ...

VLV ...

37895 17 + 72921198 - 72921329 1 132

CTG ...

LRS ...

37897 17 + 36857927 - 36858082 1 156

GTG ...

VGI ...

37899 17 + 34985483 - 34985542 1 60

GTG ...

VDT ...

37901 17 + 29691249 - 29691428 1 180

GTG ...

VVC ...

37903 17 + 34612282 - 34612437 1 156

GTG ...

VST ...

37906 17 - 15826278 - 15826358 1 81

CTG ...

LRP ...

37908 17 - 27596700 - 27596834 1 135

GTG ...

VLL ...

37910 17 - 34030064 - 34030180 1 117

GTG ...

VRH ...

37912 17 + 87643615 - 87643647 1 33

CTG ...

LMW ...

37915 17 + 20954662 - 20954742 1 81

CTG ...

LGT ...

37917 17 + 28835795 - 28835920 1 126

CTG ...

LHN ...

37919 1 + 153447852 - 153447998 1 147

GTG ...

VVV ...

37921 17 + 24895402 - 24895497 1 96

CTG ...

LVT ...

37923 17 + 25086907 - 25087062 1 156

GTG ...

VCL ...

37925 17 + 56990625 - 56990681 1 57

ATG ...

MTY ...

37928 17 + 6080817 - 6080855 1 39

CTG ...

LHR ...

37930 17 - 27580788 - 27580868 1 81

TTG ...

LRQ ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5