Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

33973 16 + 37541891 - 37541956 1 66

GTG ...

VLG ...

33975 16 + 44157098 - 44157154 1 57

GTG ...

VQC ...

33977 16 - 69858762 - 69858803 1 42

TTG ...

LRP ...

33980 16 - 85056297 - 85056485 1 189

CTG ...

LML ...

33982 16 - 4065218 - 4065334 1 117

TTG ...

LEK ...

33984 16 + 22865457 - 22865555 1 99

CTG ...

LSD ...

33986 16 - 17927142 - 17927219 1 78

TTG ...

LCG ...

33988 16 - 4060753 - 4060902 1 150

CTG ...

LQN ...

33990 16 - 90804444 - 90804596 1 153

CTG ...

LLI ...

33992 16 - 84831429 - 84831461 1 33

CTG ...

LSF ...

33994 16 + 20551520 - 20551558 1 39

CTG ...

LEE ...

33996 16 + 4649988 - 4650212 1 225

GTG ...

VRR ...

33998 16 - 91586930 - 91587028 1 99

CTG ...

LDN ...

34000 16 + 8831352 - 8831399 1 48

CTG ...

LGP ...

34002 16 + 49009136 - 49009186 1 51

TTG ...

LVP ...

34005 16 + 38347110 - 38347244 1 135

CTG ...

LAA ...

34007 16 - 90804444 - 90804563 1 120

CTG ...

LRT ...

34009 16 + 23110038 - 23110067 1 30

TTG ...

LHW ...

34011 16 - 17926026 - 17926073 1 48

CTG ...

LDC ...

34013 16 + 22866946 - 22867005 1 60

TTG ...

LEE ...

34015 16 + 57121755 - 57121883 1 129

GTG ...

VLA ...

34017 16 - 8701958 - 8702056 1 99

GTG ...

VKF ...

34019 16 + 17638544 - 17638651 1 108

CTG ...

LKH ...

34021 16 + 20559690 - 20559758 1 69

TTG ...

LNV ...

34023 16 + 38349246 - 38349302 1 57

TTG ...

LRK ...

34025 16 - 4768741 - 4768914 1 174

TTG ...

LVP ...

34027 16 + 20679764 - 20680051 1 288

GTG ...

VDL ...

34029 16 + 17625723 - 17625893 1 171

TTG ...

LHA ...

34031 16 + 4649958 - 4650212 1 255

GTG ...

VLA ...

34033 16 + 92111768 - 92111830 1 63

CTG ...

LWR ...

34037 16 + 13685070 - 13685132 1 63

ATG ...

MHC ...

34039 16 + 17631992 - 17632093 1 102

GTG ...

VEM ...

34041 16 - 91926470 - 91926502 1 33

GTG ...

VST ...

34044 16 - 15862788 - 15862985 1 198

GTG ...

VLE ...

34046 16 + 92305333 - 92305368 1 36

ATG ...

MPV ...

34048 16 + 38347158 - 38347244 1 87

CTG ...

LKP ...

34050 16 - 32087283 - 32087462 1 180

TTG ...

LSN ...

34053 16 - 91684298 - 91684471 1 174

CTG ...

LST ...

34055 16 - 30565444 - 30565485 1 42

ATG ...

MGS ...

34058 16 + 35000396 - 35000560 1 165

ATG ...

MMT ...

34060 16 + 22870920 - 22871042 1 123

GTG ...

VLL ...

34062 1 - 181211072 - 181211290 1 219

CTG ...

LPA ...

34064 16 + 37829161 - 37829265 1 105

GTG ...

VDC ...

34066 16 + 35000453 - 35000560 1 108

CTG ...

LRS ...

34068 16 + 84841442 - 84841477 1 36

ATG ...

MLM ...

34070 16 + 17077859 - 17077891 1 33

GTG ...

VFL ...

34073 16 + 32616753 - 32616995 1 243

CTG ...

LSQ ...

34076 16 + 32422879 - 32422935 1 57

GTG ...

VLN ...

34078 16 + 34921620 - 34921658 1 39

TTG ...

LVL ...

34080 16 - 91931516 - 91931545 1 30

CTG ...

LQR ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5