Metam
ORF

Logo

ORF Browser

Selected

filters

Database

M.musculus

ORFs

No result matching criteria

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

33861 16 + 4936958 - 4937008 1 51

CTG ...

LSG ...

33864 16 + 84841448 - 84841477 1 30

ATG ...

MKF ...

33866 16 - 57606662 - 57606769 1 108

TTG ...

LLS ...

33869 16 + 87367542 - 87367571 1 30

CTG ...

LSV ...

33872 16 + 37826777 - 37826848 1 72

GTG ...

VEQ ...

33874 16 + 17638538 - 17638651 1 114

CTG ...

LLL ...

33876 16 + 20659445 - 20659594 1 150

GTG ...

VGS ...

33878 16 + 91424944 - 91425123 1 180

GTG ...

VFD ...

33880 16 - 17574911 - 17575102 1 192

CTG ...

LAA ...

33882 16 + 22862646 - 22862684 1 39

CTG ...

LMT ...

33884 16 - 91684298 - 91684459 1 162

CTG ...

LRC ...

33887 16 - 59494623 - 59494805 1 183

GTG ...

VIG ...

33889 16 - 90805374 - 90805535 1 162

TTG ...

LEA ...

33891 16 - 8424822 - 8424866 1 45

GTG ...

VAP ...

33893 16 + 23110007 - 23110138 1 132

TTG ...

LEI ...

33895 16 + 10174282 - 10174410 1 129

GTG ...

VCL ...

33897 16 + 4684260 - 4684388 1 129

CTG ...

LCV ...

33899 16 - 11201274 - 11201327 1 54

TTG ...

LKK ...

33901 16 - 22436434 - 22436508 1 75

GTG ...

VIA ...

33904 16 - 91587021 - 91587092 1 72

TTG ...

LIS ...

33906 16 + 4650081 - 4650212 1 132

TTG ...

LEP ...

33908 16 + 22866934 - 22867005 1 72

TTG ...

LAS ...

33910 16 + 29615101 - 29615181 1 81

GTG ...

VSD ...

33913 16 + 17638541 - 17638651 1 111

CTG ...

LLK ...

33915 16 + 35022587 - 35022625 1 39

CTG ...

LWP ...

33917 16 + 32902481 - 32902528 1 48

CTG ...

LML ...

33920 16 - 90727285 - 90727386 1 102

ATG ...

MRR ...

33922 16 - 8701958 - 8702023 1 66

CTG ...

LQL ...

33924 16 + 20682123 - 20682272 1 150

CTG ...

LAI ...

33926 16 - 8424946 - 8424990 1 45

CTG ...

LEG ...

33928 16 + 20551499 - 20551558 1 60

CTG ...

LAE ...

33930 16 + 57121813 - 57121875 1 63

GTG ...

VTV ...

33932 16 - 90930990 - 90931055 1 66

GTG ...

VCA ...

33935 16 - 96180049 - 96180111 1 63

CTG ...

LNE ...

33938 16 - 33045516 - 33045551 1 36

CTG ...

LET ...

33941 16 + 22871700 - 22871735 1 36

GTG ...

VQK ...

33943 16 - 15862788 - 15862982 1 195

CTG ...

LEL ...

33946 16 + 17452318 - 17452353 1 36

ATG ...

MLR ...

33948 16 - 84831351 - 84831380 1 30

CTG ...

LYR ...

33950 16 - 59495565 - 59495762 1 198

GTG ...

VYI ...

33952 1 - 181001795 - 181001929 1 135

TTG ...

LSP ...

33954 16 - 20711888 - 20711923 1 36

CTG ...

LQE ...

33957 16 + 18814846 - 18814920 1 75

TTG ...

LTT ...

33959 16 - 4065218 - 4065373 1 156

GTG ...

VFI ...

33961 16 - 45396955 - 45397182 1 228

GTG ...

VSP ...

33963 16 + 37818928 - 37819071 1 144

GTG ...

VCG ...

33965 16 - 91586930 - 91586968 1 39

GTG ...

VAS ...

33967 16 - 10963327 - 10963371 1 45

ATG ...

MTA ...

33969 16 - 91587021 - 91587068 1 48

ATG ...

MRT ...

33971 16 - 17872610 - 17872657 1 48

ATG ...

MSR ...

Previous 295 Next

Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5