Metam
ORF

Logo

ORF Browser

Selected

filters

Database

M.musculus

ORFs

No result matching criteria

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

33746 16 - 17302987 - 17303076 1 90

CTG ...

LLQ ...

33749 16 - 15862788 - 15862973 1 186

TTG ...

LTC ...

33751 16 + 33290161 - 33290202 1 42

CTG ...

LPR ...

33754 16 + 18812332 - 18812421 1 90

GTG ...

VAW ...

33757 16 + 4648348 - 4648515 1 168

CTG ...

LTQ ...

33759 1 - 78482287 - 78482343 1 57

CTG ...

LCF ...

33762 16 - 20605555 - 20605623 1 69

CTG ...

LLQ ...

33765 16 - 65550983 - 65551024 1 42

GTG ...

VAP ...

33768 16 - 4770672 - 4770725 1 54

CTG ...

LPP ...

33771 1 - 55003206 - 55003418 1 213

TTG ...

LGG ...

33773 16 + 17639748 - 17639849 1 102

TTG ...

LEM ...

33775 1 - 181203020 - 181203070 1 51

CTG ...

LTP ...

33777 16 - 87487530 - 87487586 1 57

GTG ...

VAD ...

33779 16 - 45408886 - 45408960 1 75

GTG ...

VSL ...

33781 16 + 45573376 - 45573429 1 54

GTG ...

VQV ...

33784 16 + 5242539 - 5242607 1 69

CTG ...

LPM ...

33786 1 - 86359217 - 86359279 1 63

CTG ...

LSS ...

33788 16 + 32467189 - 32467224 1 36

CTG ...

LPR ...

33790 16 + 17452321 - 17452353 1 33

CTG ...

LRG ...

33793 1 + 70724808 - 70724942 1 135

TTG ...

LLD ...

33795 16 + 17038350 - 17038430 1 81

TTG ...

LDD ...

33798 16 + 91729502 - 91729558 1 57

ATG ...

MVC ...

33800 16 + 20681236 - 20681364 1 129

CTG ...

LLG ...

33802 16 - 90804444 - 90804527 1 84

GTG ...

VGA ...

33804 16 + 96152991 - 96153074 1 84

TTG ...

LAK ...

33807 16 + 20558734 - 20558850 1 117

CTG ...

LQL ...

33809 16 - 75757781 - 75757993 1 213

GTG ...

VVL ...

33811 16 + 4648408 - 4648515 1 108

TTG ...

LLA ...

33813 1 - 84782818 - 84782862 1 45

CTG ...

LPG ...

33816 16 + 13685100 - 13685132 1 33

GTG ...

VSM ...

33819 16 + 36851273 - 36851323 1 51

TTG ...

LPC ...

33821 16 - 87491278 - 87491367 1 90

GTG ...

VFA ...

33823 1 + 151349379 - 151349417 1 39

ATG ...

MMH ...

33825 16 - 59639027 - 59639104 1 78

CTG ...

LFL ...

33827 1 - 143609366 - 143609413 1 48

TTG ...

LDR ...

33829 16 + 32900664 - 32900711 1 48

TTG ...

LTV ...

33831 16 - 5021334 - 5021366 1 33

GTG ...

VCR ...

33833 16 + 57121743 - 57121883 1 141

CTG ...

LLL ...

33835 1 + 70724898 - 70724942 1 45

CTG ...

LYS ...

33837 16 - 91586938 - 91587003 1 66

GTG ...

VSV ...

33839 16 + 20720545 - 20720610 1 66

ATG ...

MGK ...

33841 16 + 22871003 - 22871167 1 165

CTG ...

LPN ...

33843 16 - 4068282 - 4068335 1 54

CTG ...

LSP ...

33845 16 + 33760775 - 33760849 1 75

GTG ...

VVI ...

33847 16 + 32902484 - 32902528 1 45

ATG ...

MLR ...

33849 16 + 18249966 - 18250037 1 72

GTG ...

VPY ...

33852 16 - 15862368 - 15862475 1 108

GTG ...

VLG ...

33854 16 - 20298214 - 20298315 1 102

TTG ...

LFS ...

33857 1 + 160197003 - 160197143 1 141

TTG ...

LRD ...

33859 16 + 33123587 - 33123622 1 36

CTG ...

LLA ...

Previous 294 Next

Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5