Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

33623 16 + 32422831 - 32422935 1 105

CTG ...

LWL ...

33626 16 + 22862634 - 22862684 1 51

CTG ...

LTG ...

33630 16 + 35022545 - 35022625 1 81

CTG ...

LAT ...

33633 16 + 36851206 - 36851298 1 93

TTG ...

LIQ ...

33636 16 + 20559645 - 20559758 1 114

CTG ...

LKI ...

33639 16 + 43569709 - 43569759 1 51

ATG ...

MNI ...

33642 16 - 11232632 - 11232703 1 72

TTG ...

LGL ...

33644 16 + 33760778 - 33760849 1 72

GTG ...

VIA ...

33647 16 + 4650123 - 4650212 1 90

TTG ...

LSG ...

33649 16 - 91583272 - 91583349 1 78

GTG ...

VYP ...

33652 16 - 8424822 - 8424878 1 57

CTG ...

LRE ...

33654 1 + 125585094 - 125585237 1 144

CTG ...

LLL ...

33656 16 - 37535751 - 37535819 1 69

ATG ...

MRE ...

33659 16 - 8701958 - 8702032 1 75

GTG ...

VLH ...

33664 16 + 20659968 - 20660147 1 180

GTG ...

VLK ...

33666 16 - 18411891 - 18411947 1 57

CTG ...

LLS ...

33669 16 + 16983616 - 16983684 1 69

GTG ...

VQP ...

33671 16 + 8830540 - 8830689 1 150

GTG ...

VPG ...

33673 16 + 38347093 - 38347161 1 69

CTG ...

LER ...

33675 16 - 17574911 - 17575081 1 171

CTG ...

LVS ...

33677 1 + 58401423 - 58401515 1 93

ATG ...

MSV ...

33679 16 + 23110106 - 23110138 1 33

TTG ...

LVL ...

33681 16 - 10963327 - 10963413 1 87

TTG ...

LPC ...

33683 16 - 85103202 - 85103270 1 69

GTG ...

VQA ...

33685 16 + 32902450 - 32902599 1 150

GTG ...

VPS ...

33688 16 + 44140000 - 44140107 1 108

GTG ...

VGL ...

33690 16 - 4987454 - 4987681 1 228

CTG ...

LTY ...

33692 16 + 36021497 - 36021652 1 156

CTG ...

LNV ...

33694 16 + 37560057 - 37560113 1 57

TTG ...

LEV ...

33697 16 - 17574911 - 17575189 1 279

GTG ...

VGF ...

33699 16 + 32905565 - 32905630 1 66

CTG ...

LKE ...

33701 16 - 8698404 - 8698502 1 99

CTG ...

LKN ...

33704 1 - 151473124 - 151473306 1 183

GTG ...

VEQ ...

33706 16 - 8424822 - 8424884 1 63

TTG ...

LEL ...

33708 16 + 4684236 - 4684388 1 153

GTG ...

VAT ...

33710 16 - 45396955 - 45397206 1 252

GTG ...

VTW ...

33712 16 + 10421658 - 10421690 1 33

GTG ...

VPL ...

33714 16 + 4684167 - 4684388 1 222

GTG ...

VAV ...

33716 16 - 5019287 - 5019340 1 54

ATG ...

MRT ...

33718 16 - 13887693 - 13887734 1 42

TTG ...

LKE ...

33721 16 + 92305306 - 92305368 1 63

TTG ...

LGP ...

33723 16 - 84730415 - 84730480 1 66

CTG ...

LGP ...

33726 16 - 17842521 - 17842622 1 102

CTG ...

LVP ...

33728 16 + 20550611 - 20550691 1 81

GTG ...

VLE ...

33730 1 - 44118314 - 44118484 1 171

CTG ...

LLS ...

33733 16 - 17927363 - 17927401 1 39

TTG ...

LLY ...

33736 16 + 17625747 - 17625893 1 147

GTG ...

VES ...

33738 1 - 135122267 - 135122488 1 222

CTG ...

LRP ...

33740 16 - 45396955 - 45397053 1 99

TTG ...

LED ...

33743 16 - 13872434 - 13872493 1 60

GTG ...

VPC ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5