Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

33500 1 + 150432413 - 150432655 1 243

GTG ...

VKD ...

33502 16 - 23120905 - 23120934 1 30

TTG ...

LAA ...

33504 16 + 20680968 - 20681102 1 135

GTG ...

VPT ...

33506 1 + 172119302 - 172119388 1 87

GTG ...

VEK ...

33508 16 + 5242551 - 5242607 1 57

GTG ...

VVD ...

33510 16 + 38347169 - 38347201 1 33

CTG ...

LCL ...

33512 1 - 66854620 - 66854703 1 84

TTG ...

LLG ...

33515 16 + 10421634 - 10421690 1 57

CTG ...

LRI ...

33518 16 - 90804444 - 90804530 1 87

GTG ...

VVG ...

33521 16 + 32895109 - 32895201 1 93

TTG ...

LKR ...

33523 16 + 4684161 - 4684388 1 228

TTG ...

LRV ...

33526 16 - 45408886 - 45408954 1 69

CTG ...

LLT ...

33529 16 - 87491278 - 87491370 1 93

CTG ...

LVF ...

33531 1 + 180413832 - 180413864 1 33

GTG ...

VSL ...

33533 16 + 32620442 - 32620576 1 135

GTG ...

VKL ...

33535 16 - 35453447 - 35453488 1 42

CTG ...

LEP ...

33538 16 - 11228076 - 11228183 1 108

GTG ...

VVL ...

33541 16 - 87487530 - 87487637 1 108

GTG ...

VKA ...

33544 16 - 17926171 - 17926275 1 105

CTG ...

LIT ...

33546 16 - 90799988 - 90800113 1 126

GTG ...

VHD ...

33548 16 + 20717878 - 20717958 1 81

GTG ...

VAA ...

33551 16 + 10170448 - 10170495 1 48

CTG ...

LPF ...

33554 16 + 38349267 - 38349302 1 36

GTG ...

VDI ...

33556 16 + 8830528 - 8830689 1 162

GTG ...

VGA ...

33558 16 - 10963249 - 10963305 1 57

ATG ...

MRE ...

33561 16 - 59494623 - 59494772 1 150

GTG ...

VAL ...

33563 16 - 75757781 - 75757897 1 117

CTG ...

LAV ...

33565 16 - 21938034 - 21938084 1 51

CTG ...

LVP ...

33568 16 - 4065218 - 4065310 1 93

GTG ...

VCE ...

33571 1 - 75142255 - 75142374 1 120

ATG ...

MTS ...

33574 16 + 91424908 - 91425123 1 216

CTG ...

LLF ...

33577 16 - 45408852 - 45408896 1 45

CTG ...

LVS ...

33580 16 - 31948247 - 31948312 1 66

ATG ...

MQP ...

33583 1 - 171145736 - 171145777 1 42

ATG ...

MLS ...

33586 16 - 59493597 - 59493653 1 57

GTG ...

VNQ ...

33588 16 + 36033723 - 36033908 1 186

CTG ...

LDK ...

33591 16 - 4060753 - 4060911 1 159

CTG ...

LEA ...

33593 16 - 87491278 - 87491424 1 147

GTG ...

VMA ...

33595 16 - 30582527 - 30582604 1 78

CTG ...

LSF ...

33598 16 + 33829829 - 33829870 1 42

GTG ...

VAA ...

33601 16 - 20287825 - 20287902 1 78

CTG ...

LQR ...

33604 1 + 59764033 - 59764098 1 66

ATG ...

MEA ...

33606 16 + 33829826 - 33829870 1 45

ATG ...

MVA ...

33608 16 + 20682114 - 20682272 1 159

GTG ...

VTQ ...

33610 1 - 172072037 - 172072273 1 237

CTG ...

LDS ...

33612 16 + 32618293 - 32618349 1 57

GTG ...

VIV ...

33614 16 + 23110064 - 23110138 1 75

ATG ...

MKC ...

33617 1 - 82571412 - 82571462 1 51

TTG ...

LGT ...

33619 16 - 15862788 - 15862892 1 105

CTG ...

LHS ...

33621 16 - 22436434 - 22436523 1 90

CTG ...

LKP ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5