Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

34083 16 + 22858075 - 22858113 1 39

TTG ...

LLL ...

34085 16 + 44139968 - 44140009 1 42

CTG ...

LAW ...

34087 16 - 4987454 - 4987546 1 93

CTG ...

LAP ...

34089 16 - 84831395 - 84831559 1 165

ATG ...

MDF ...

34091 16 - 17925813 - 17925902 1 90

CTG ...

LGR ...

34093 16 - 17891476 - 17891589 1 114

CTG ...

LDP ...

34095 16 + 4684248 - 4684388 1 141

CTG ...

LCR ...

34097 16 - 57606662 - 57606802 1 141

GTG ...

VKL ...

34099 16 + 17035490 - 17035555 1 66

TTG ...

LKL ...

34101 16 + 37777296 - 37777358 1 63

GTG ...

VET ...

34104 16 - 10966390 - 10966566 1 177

GTG ...

VGV ...

34107 16 + 20687169 - 20687279 1 111

TTG ...

LAE ...

34109 16 - 16358853 - 16358981 1 129

ATG ...

MGA ...

34111 16 - 84962796 - 84962858 1 63

CTG ...

LKM ...

34113 16 + 35022443 - 35022625 1 183

GTG ...

VQA ...

34115 16 + 4762566 - 4762628 1 63

GTG ...

VRA ...

34118 16 + 22014163 - 22014195 1 33

CTG ...

LPV ...

34120 1 - 177776453 - 177776533 1 81

GTG ...

VYS ...

34122 16 + 49015028 - 49015093 1 66

CTG ...

LES ...

34124 16 - 8698404 - 8698514 1 111

GTG ...

VFK ...

34126 16 + 44369926 - 44370024 1 99

CTG ...

LWT ...

34129 16 - 8424946 - 8424993 1 48

CTG ...

LLE ...

34131 1 - 71598360 - 71598461 1 102

CTG ...

LEP ...

34134 16 + 31948674 - 31948781 1 108

CTG ...

LRS ...

34136 16 + 38347063 - 38347161 1 99

TTG ...

LRV ...

34138 16 + 29618132 - 29618299 1 168

CTG ...

LQQ ...

34140 16 + 20552334 - 20552495 1 162

TTG ...

LHS ...

34142 16 + 22865508 - 22865555 1 48

TTG ...

LKD ...

34144 16 - 14304517 - 14304552 1 36

GTG ...

VVL ...

34147 16 + 32619136 - 32619180 1 45

GTG ...

VQT ...

34149 1 - 55019263 - 55019352 1 90

ATG ...

MKP ...

34151 16 + 32895140 - 32895190 1 51

ATG ...

MKY ...

34153 16 + 20651727 - 20651855 1 129

GTG ...

VDE ...

34155 16 + 17626853 - 17626957 1 105

CTG ...

LVD ...

34157 16 + 22866898 - 22867005 1 108

ATG ...

MSL ...

34159 16 - 91583272 - 91583352 1 81

GTG ...

VVY ...

34161 16 - 4987743 - 4987799 1 57

GTG ...

VEN ...

34163 16 + 29618156 - 29618299 1 144

GTG ...

VST ...

34165 16 - 57606662 - 57606817 1 156

TTG ...

LLT ...

34167 16 + 91425049 - 91425123 1 75

CTG ...

LES ...

34170 16 + 5235216 - 5235296 1 81

TTG ...

LLW ...

34172 16 - 33045516 - 33045644 1 129

TTG ...

LLT ...

34174 16 + 17626436 - 17626552 1 117

GTG ...

VKA ...

34176 1 - 118300932 - 118301045 1 114

CTG ...

LCS ...

34178 16 + 44139973 - 44140107 1 135

TTG ...

LAS ...

34180 16 - 10963327 - 10963383 1 57

CTG ...

LSP ...

34182 16 + 20685885 - 20685959 1 75

TTG ...

LNR ...

34184 16 + 59475566 - 59475604 1 39

ATG ...

MRT ...

34187 16 + 22869162 - 22869221 1 60

CTG ...

LGC ...

34189 16 - 90961369 - 90961473 1 105

TTG ...

LFS ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5