Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

33088 1 - 118300804 - 118301031 1 228

CTG ...

LSV ...

33090 15 + 74958318 - 74958550 2 129

CTG ...

LPV ...

33092 15 + 89568381 - 89569497 2 219

CTG ...

LSL ...

33094 15 - 80260984 - 80261407 3 258

CTG ...

LPP ...

33096 15 - 81366462 - 81369476 3 111

CTG ...

LLY ...

33098 15 + 99402141 - 99404450 2 66

ATG ...

MSM ...

33100 15 + 97964495 - 97964902 3 72

GTG ...

VPE ...

33102 15 - 81951490 - 81952085 3 285

TTG ...

LPV ...

33104 1 + 84896591 - 84896716 1 126

CTG ...

LKI ...

33107 1 + 43954608 - 43954781 1 174

TTG ...

LSK ...

33109 15 - 73605914 - 73624432 2 270

CTG ...

LFS ...

33111 15 - 38493573 - 38494329 2 102

GTG ...

VEA ...

33114 15 - 76047392 - 76047687 3 213

CTG ...

LSP ...

33117 15 + 79144611 - 79146134 2 135

TTG ...

LMT ...

33119 15 + 81936975 - 81946659 2 42

CTG ...

LPR ...

33122 15 + 89021176 - 89022089 2 192

TTG ...

LPD ...

33124 15 + 34139825 - 34140762 2 144

GTG ...

VPP ...

33126 15 - 83135329 - 83137493 2 87

TTG ...

LSI ...

33128 15 - 73605914 - 73624372 2 210

TTG ...

LCL ...

33130 15 - 10592195 - 10593084 2 141

TTG ...

LQS ...

33132 15 - 81365494 - 81366396 2 135

CTG ...

LDS ...

33134 15 - 83392633 - 83401955 3 114

CTG ...

LLP ...

33136 15 + 34273295 - 34276166 2 87

TTG ...

LQS ...

33138 1 + 63176990 - 63177040 1 51

GTG ...

VGP ...

33141 15 + 97964480 - 97964902 3 87

GTG ...

VPV ...

33143 15 - 83160166 - 83160352 2 39

TTG ...

LQE ...

33145 1 + 74349720 - 74349881 1 162

GTG ...

VSS ...

33147 1 + 167354451 - 167354582 1 132

GTG ...

VET ...

33149 15 + 79144614 - 79146134 2 132

ATG ...

MTL ...

33151 1 + 85905374 - 85905406 1 33

CTG ...

LQT ...

33153 1 - 93750738 - 93750773 1 36

ATG ...

MAM ...

33155 15 + 102483227 - 102484184 2 81

TTG ...

LLA ...

33157 15 - 76502236 - 76502632 3 294

GTG ...

VRT ...

33159 15 - 99631222 - 99632163 2 102

CTG ...

LFP ...

33161 15 - 74634767 - 74636273 3 285

TTG ...

LDF ...

33163 15 - 81365494 - 81366480 2 219

CTG ...

LGE ...

33165 15 + 99725836 - 99727826 3 195

TTG ...

LQP ...

33168 1 - 82586684 - 82586743 1 60

CTG ...

LDR ...

33170 1 + 153447822 - 153447998 1 177

TTG ...

LIQ ...

33172 15 + 82339008 - 82348037 2 216

CTG ...

LCL ...

33174 1 + 59764021 - 59764098 1 78

GTG ...

VDS ...

33176 15 + 99402120 - 99404450 2 87

TTG ...

LWR ...

33178 15 - 31496184 - 31498617 2 54

ATG ...

MLL ...

33180 15 - 81365494 - 81366456 2 195

CTG ...

LEE ...

33182 1 - 86546598 - 86546747 1 150

GTG ...

VSR ...

33184 15 - 79832716 - 79833940 4 201

GTG ...

VKW ...

33186 15 + 81676875 - 81682159 2 279

GTG ...

VGS ...

33188 15 - 86155106 - 86156642 2 69

ATG ...

MPT ...

33190 15 - 73605973 - 73624353 2 132

GTG ...

VRL ...

33192 15 + 99717612 - 99718219 2 105

CTG ...

LAR ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5