Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

32981 15 - 79543771 - 79546213 2 105

GTG ...

VTG ...

32983 15 + 102483209 - 102484184 2 99

CTG ...

LSG ...

32985 15 - 83392633 - 83401964 3 123

CTG ...

LEC ...

32987 1 + 185338143 - 185338289 1 147

CTG ...

LVA ...

32989 1 - 54987930 - 54988040 1 111

GTG ...

VFE ...

32991 15 + 80234544 - 80236047 2 258

CTG ...

LEV ...

32993 15 - 63931616 - 63935694 3 180

ATG ...

MER ...

32995 15 - 83128048 - 83129224 2 39

ATG ...

MSS ...

32997 15 - 79538713 - 79538855 2 57

TTG ...

LSP ...

32999 15 - 79538713 - 79538867 2 69

TTG ...

LIW ...

33001 15 - 79832716 - 79833736 3 144

CTG ...

LDS ...

33003 1 + 42896115 - 42896180 1 66

CTG ...

LIK ...

33005 15 + 34273310 - 34276166 2 72

TTG ...

LSI ...

33007 1 - 88204950 - 88205105 1 156

GTG ...

VST ...

33009 15 - 81951490 - 81952094 3 294

CTG ...

LPA ...

33011 15 - 81956218 - 81956411 2 93

CTG ...

LRM ...

33013 15 + 34139882 - 34140762 2 87

GTG ...

VPP ...

33015 15 + 103297755 - 103298740 3 219

TTG ...

LCS ...

33017 15 - 81365494 - 81366444 2 183

CTG ...

LEW ...

33019 15 - 81388394 - 81389730 3 87

CTG ...

LPG ...

33022 1 - 55248806 - 55248916 1 111

GTG ...

VGL ...

33024 15 - 103200817 - 103205589 2 183

GTG ...

VKT ...

33026 15 - 89588178 - 89590349 2 117

CTG ...

LEQ ...

33028 15 - 79540451 - 79541086 2 81

GTG ...

VAG ...

33030 15 + 102490797 - 102498547 3 66

ATG ...

MSG ...

33032 15 - 89156281 - 89156557 2 165

CTG ...

LNT ...

33035 15 - 73605973 - 73624347 2 126

CTG ...

LST ...

33037 15 + 74958324 - 74958550 2 123

GTG ...

VAS ...

33039 15 + 81686291 - 81687052 2 144

TTG ...

LGV ...

33041 15 - 76502236 - 76502602 3 264

CTG ...

LWP ...

33045 15 - 31459189 - 31462150 3 300

TTG ...

LYD ...

33047 1 - 93629036 - 93629077 1 42

GTG ...

VTV ...

33049 15 + 10486224 - 10486531 3 120

GTG ...

VRR ...

33051 15 - 74634810 - 74635561 2 138

CTG ...

LDQ ...

33053 15 - 103200817 - 103205520 2 114

ATG ...

MIL ...

33055 15 + 100618145 - 100619437 2 96

CTG ...

LVP ...

33057 15 - 83160881 - 83162294 3 240

CTG ...

LTL ...

33059 15 + 10486215 - 10486531 3 129

GTG ...

VAA ...

33061 15 - 103200817 - 103205523 2 117

CTG ...

LMI ...

33063 15 - 79832716 - 79833943 4 204

CTG ...

LVK ...

33065 15 + 102445494 - 102445838 2 63

TTG ...

LDT ...

33067 15 + 12826132 - 12827253 2 63

ATG ...

MGT ...

33069 15 - 74634767 - 74636264 3 276

TTG ...

LGA ...

33071 15 + 99725822 - 99727674 3 57

CTG ...

LTR ...

33073 15 - 57875603 - 57877445 2 33

TTG ...

LDS ...

33075 15 - 74797209 - 74798666 3 195

TTG ...

LLS ...

33077 15 + 10177846 - 10293654 2 30

ATG ...

MAD ...

33080 15 - 74634767 - 74635626 3 246

TTG ...

LPP ...

33082 15 + 79248278 - 79248992 2 291

CTG ...

LLD ...

33085 15 - 81365494 - 81366375 2 114

GTG ...

VIQ ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5