Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

32873 15 - 73605914 - 73624360 2 198

TTG ...

LAC ...

32875 15 - 38514596 - 38519086 2 192

CTG ...

LPP ...

32877 15 + 78929770 - 78930028 2 66

CTG ...

LPS ...

32879 15 + 85336457 - 85359500 3 171

GTG ...

VAR ...

32881 15 + 82341101 - 82348037 2 141

CTG ...

LMS ...

32883 15 - 83392633 - 83401952 3 111

CTG ...

LPP ...

32885 15 + 89568387 - 89569497 2 213

CTG ...

LCW ...

32887 15 - 73605914 - 73624459 2 297

CTG ...

LQR ...

32889 15 + 99717639 - 99718219 2 78

CTG ...

LAT ...

32891 15 - 79596311 - 79600107 2 78

ATG ...

MSK ...

32893 15 + 12117922 - 12118338 2 126

ATG ...

MPC ...

32896 1 - 88204950 - 88204997 1 48

CTG ...

LII ...

32898 15 - 79538713 - 79538831 2 33

TTG ...

LIK ...

32900 1 + 191822216 - 191822368 1 153

GTG ...

VNL ...

32902 15 - 103317961 - 103320318 2 180

ATG ...

MSV ...

32904 15 - 25364894 - 25413598 3 72

TTG ...

LEA ...

32906 1 + 156051850 - 156051891 1 42

TTG ...

LLC ...

32908 15 + 78928008 - 78929728 2 138

ATG ...

MSQ ...

32910 1 - 67020892 - 67020936 1 45

ATG ...

MRA ...

32912 15 - 74797209 - 74798693 3 222

ATG ...

MNS ...

32914 15 - 99631222 - 99632139 2 78

TTG ...

LKL ...

32917 15 - 83160368 - 83160877 2 111

TTG ...

LET ...

32919 15 + 82338996 - 82348037 2 228

GTG ...

VRA ...

32922 15 + 85336397 - 85359500 3 231

CTG ...

LSP ...

32924 15 + 79144638 - 79146134 2 108

TTG ...

LTT ...

32927 15 - 74634767 - 74635575 2 195

GTG ...

VLA ...

32930 15 - 75676103 - 75678713 2 90

ATG ...

MSP ...

32933 15 + 99402096 - 99404450 2 111

ATG ...

MPV ...

32935 1 - 184819221 - 184819277 1 57

GTG ...

VEK ...

32937 15 - 25364894 - 25413715 3 189

GTG ...

VAA ...

32939 15 - 81870481 - 81871821 3 51

CTG ...

LVW ...

32941 15 - 81365494 - 81369408 3 243

ATG ...

MAL ...

32943 15 - 31459189 - 31462126 3 276

GTG ...

VEM ...

32945 15 + 93410719 - 93420302 2 84

CTG ...

LRD ...

32947 15 - 74634767 - 74636246 3 258

CTG ...

LSL ...

32949 15 - 79535972 - 79537095 3 144

TTG ...

LER ...

32951 15 - 83160368 - 83160865 2 99

TTG ...

LNS ...

32953 15 + 79248281 - 79248992 2 288

CTG ...

LDQ ...

32956 1 - 118305138 - 118305281 1 144

CTG ...

LVF ...

32958 15 - 99631222 - 99632151 2 90

ATG ...

MGD ...

32960 1 + 87297651 - 87297767 1 117

CTG ...

LLL ...

32962 15 + 78926749 - 78927991 3 78

CTG ...

LLV ...

32964 15 - 81870481 - 81871818 3 48

GTG ...

VWL ...

32966 15 + 34272389 - 34273285 2 87

GTG ...

VPW ...

32968 1 - 179795662 - 179795805 1 144

GTG ...

VKE ...

32971 1 + 172119913 - 172120083 1 171

GTG ...

VHM ...

32973 15 - 79535972 - 79536999 2 48

ATG ...

MSS ...

32975 1 + 85894582 - 85894710 1 129

CTG ...

LRR ...

32977 15 + 89568414 - 89569497 2 186

TTG ...

LPR ...

32979 15 - 83392633 - 83401976 3 135

CTG ...

LTP ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5