Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

32763 15 - 81365494 - 81366489 2 228

GTG ...

VVF ...

32766 15 - 98741110 - 98741377 2 60

GTG ...

VAR ...

32768 15 + 99725806 - 99727826 3 225

CTG ...

LSR ...

32770 15 + 81872484 - 81889364 3 132

ATG ...

MRP ...

32772 15 + 74821344 - 74834596 2 51

GTG ...

VSL ...

32774 15 + 100618073 - 100619437 2 168

TTG ...

LVP ...

32776 1 + 133131387 - 133131494 1 108

TTG ...

LAF ...

32778 15 - 38514596 - 38519155 2 261

CTG ...

LNP ...

32780 15 - 55540203 - 55543355 2 39

CTG ...

LRS ...

32783 15 - 38514596 - 38518993 2 99

CTG ...

LLK ...

32785 15 - 89588178 - 89590406 2 174

CTG ...

LAV ...

32788 15 + 76248531 - 76248781 2 129

TTG ...

LSG ...

32790 15 - 98741378 - 98742616 2 81

TTG ...

LSP ...

32792 15 + 89021194 - 89022089 2 174

TTG ...

LVC ...

32796 15 + 76248558 - 76248781 2 102

ATG ...

MSP ...

32798 1 - 93629036 - 93629203 1 168

TTG ...

LGR ...

32800 15 + 99126644 - 99149656 2 267

CTG ...

LRG ...

32802 15 + 89020434 - 89022089 3 210

TTG ...

LQV ...

32804 15 + 99126734 - 99149656 2 177

CTG ...

LGE ...

32806 15 - 81951490 - 81952097 3 297

CTG ...

LLP ...

32809 15 + 102483230 - 102484184 2 78

CTG ...

LAF ...

32811 15 - 83392633 - 83401934 3 93

CTG ...

LQK ...

32813 15 - 83160881 - 83161926 2 147

ATG ...

MAT ...

32815 1 - 119483517 - 119483603 1 87

CTG ...

LPT ...

32818 15 - 76595885 - 76596191 3 231

CTG ...

LYS ...

32821 15 + 34273304 - 34276166 2 78

CTG ...

LCL ...

32823 15 - 83160881 - 83162234 3 180

TTG ...

LAN ...

32826 15 - 63931616 - 63935679 3 165

ATG ...

MIF ...

32828 15 + 99126851 - 99149656 2 60

CTG ...

LGG ...

32830 15 - 81365494 - 81366468 2 207

CTG ...

LVI ...

32832 15 + 76248543 - 76248781 2 117

ATG ...

MSG ...

32834 15 + 102483257 - 102484184 2 51

GTG ...

VSN ...

32836 1 + 134406322 - 134406486 1 165

TTG ...

LLA ...

32838 15 + 78926752 - 78927991 3 75

CTG ...

LVE ...

32840 15 - 79538713 - 79538885 2 87

ATG ...

MRL ...

32842 1 + 150432425 - 150432655 1 231

CTG ...

LTK ...

32844 15 - 81366462 - 81369464 3 99

TTG ...

LFS ...

32846 15 - 103213159 - 103239756 3 120

GTG ...

VSD ...

32848 15 - 98740476 - 98741022 2 51

ATG ...

MLC ...

32850 15 - 38514596 - 38519071 2 177

CTG ...

LLS ...

32852 15 - 79538713 - 79538834 2 36

TTG ...

LLI ...

32854 1 + 165461410 - 165461487 1 78

CTG ...

LPA ...

32856 15 - 98740476 - 98741034 2 63

ATG ...

MSS ...

32858 15 - 79535972 - 79537038 2 87

ATG ...

MET ...

32860 15 - 80260984 - 80261416 3 267

ATG ...

MPC ...

32863 15 - 81956218 - 81956405 2 87

ATG ...

MGQ ...

32865 15 + 99126611 - 99149656 2 300

GTG ...

VDP ...

32867 15 + 93410731 - 93420302 2 72

ATG ...

MTT ...

32869 15 + 10486194 - 10486531 3 150

CTG ...

LAP ...

32871 15 - 79535972 - 79537053 2 102

CTG ...

LLC ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5