Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

32652 15 - 81388326 - 81388379 1 54

TTG ...

LNQ ...

32654 15 - 83138287 - 83138496 1 210

GTG ...

VSG ...

32656 15 + 81681923 - 81682159 1 237

GTG ...

VES ...

32658 1 + 69870334 - 69870375 1 42

GTG ...

VQE ...

32660 1 + 171437601 - 171437705 1 105

TTG ...

LEL ...

32663 15 - 38514596 - 38519176 2 282

CTG ...

LLC ...

32665 1 - 134234192 - 134234377 1 186

ATG ...

MCP ...

32667 15 - 79543771 - 79546228 2 120

TTG ...

LGI ...

32669 15 - 73605914 - 73624363 2 201

CTG ...

LLA ...

32671 1 + 105753555 - 105753623 1 69

TTG ...

LNK ...

32673 15 - 38514596 - 38519074 2 180

CTG ...

LLL ...

32675 1 + 165461255 - 165461458 1 204

CTG ...

LPE ...

32677 15 - 31459189 - 31462120 3 270

ATG ...

MQN ...

32679 15 - 99631222 - 99632133 2 72

CTG ...

LCL ...

32682 1 + 128151757 - 128151810 1 54

ATG ...

MIY ...

32684 15 + 85336421 - 85359500 3 207

CTG ...

LLS ...

32686 15 + 99402105 - 99404450 2 102

TTG ...

LHY ...

32688 15 - 74634767 - 74635656 3 276

TTG ...

LAR ...

32690 15 + 33083288 - 33212831 2 51

GTG ...

VAA ...

32692 1 + 160197046 - 160197117 1 72

ATG ...

MRG ...

32694 1 + 167352567 - 167352743 1 177

TTG ...

LAV ...

32696 15 - 81951490 - 81952064 3 264

TTG ...

LSQ ...

32700 15 - 81365494 - 81369453 4 288

TTG ...

LFS ...

32702 15 - 79543771 - 79546240 2 132

GTG ...

VEA ...

32704 1 + 180413802 - 180413864 1 63

CTG ...

LQM ...

32706 15 - 83160368 - 83160847 2 81

ATG ...

MGY ...

32708 15 - 73605914 - 73624450 2 288

TTG ...

LFL ...

32710 15 + 102473365 - 102474671 4 192

ATG ...

MSL ...

32712 15 - 79535972 - 79537065 3 114

CTG ...

LIV ...

32714 15 + 82341017 - 82348037 2 225

CTG ...

LWR ...

32716 15 + 34136774 - 34140762 3 282

CTG ...

LKT ...

32719 1 - 178331345 - 178331392 1 48

TTG ...

LKL ...

32721 15 + 79659258 - 79661439 2 105

CTG ...

LQA ...

32723 15 + 81686270 - 81687052 2 165

CTG ...

LED ...

32725 15 + 3272774 - 3274850 3 222

CTG ...

LID ...

32728 15 - 83158897 - 83160444 4 222

CTG ...

LLL ...

32730 15 - 79538713 - 79538894 2 96

TTG ...

LCW ...

32732 1 + 42895353 - 42895421 1 69

GTG ...

VYG ...

32734 15 - 100412250 - 100423002 2 54

ATG ...

MES ...

32737 15 + 81676872 - 81682159 2 282

TTG ...

LVG ...

32739 15 - 81918323 - 81918713 2 48

TTG ...

LGR ...

32742 15 - 74797209 - 74798645 3 174

GTG ...

VGS ...

32744 15 - 99631222 - 99632121 2 60

TTG ...

LRH ...

32746 15 + 102483251 - 102484184 2 57

TTG ...

LSV ...

32748 15 - 76502236 - 76502581 3 243

CTG ...

LTS ...

32751 15 - 83160881 - 83162273 3 219

TTG ...

LPS ...

32753 1 + 15813088 - 15813168 1 81

CTG ...

LMI ...

32755 15 - 98813373 - 98813788 3 300

CTG ...

LTP ...

32758 15 + 12826114 - 12827253 2 81

ATG ...

MPE ...

32761 15 - 11991078 - 11993817 2 33

GTG ...

VIR ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5