Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

32548 15 - 38518965 - 38519171 1 207

CTG ...

LRS ...

32550 15 + 76296086 - 76296145 1 60

TTG ...

LNS ...

32552 15 + 76295731 - 76295841 1 111

GTG ...

VEE ...

32554 1 + 90606598 - 90606690 1 93

CTG ...

LGS ...

32556 15 - 83138287 - 83138532 1 246

GTG ...

VFA ...

32558 1 - 172069972 - 172070013 1 42

GTG ...

VVL ...

32560 1 + 153437613 - 153437651 1 39

GTG ...

VMT ...

32562 15 - 99736221 - 99736436 1 216

GTG ...

VSK ...

32564 15 + 76334640 - 76334825 1 186

CTG ...

LFL ...

32566 1 + 86128258 - 86128317 1 60

TTG ...

LAY ...

32568 15 - 78173815 - 78174006 1 192

CTG ...

LDL ...

32570 15 + 3274706 - 3274924 1 219

CTG ...

LSP ...

32572 15 + 81008306 - 81008482 1 177

CTG ...

LHW ...

32574 1 - 178331189 - 178331245 1 57

CTG ...

LPR ...

32576 15 + 81684750 - 81684983 1 234

CTG ...

LEA ...

32578 15 + 102490674 - 102490793 1 120

ATG ...

MRS ...

32581 15 + 26409159 - 26409419 1 261

TTG ...

LHW ...

32583 1 - 181197571 - 181197714 1 144

GTG ...

VML ...

32585 15 + 85359513 - 85359578 1 66

ATG ...

MLL ...

32587 15 + 82345987 - 82346286 1 300

GTG ...

VCV ...

32589 15 + 98095162 - 98095227 1 66

ATG ...

MDD ...

32591 15 - 83367019 - 83367162 1 144

CTG ...

LAI ...

32593 15 - 96699438 - 96699479 1 42

CTG ...

LVC ...

32595 15 - 86141558 - 86141596 1 39

GTG ...

VRL ...

32598 15 - 83138287 - 83138421 1 135

TTG ...

LTP ...

32600 15 - 99631079 - 99631192 1 114

CTG ...

LEP ...

32602 1 - 86351353 - 86351394 1 42

CTG ...

LIG ...

32604 15 + 76334598 - 76334825 1 228

CTG ...

LLV ...

32606 15 - 86154921 - 86155079 1 159

CTG ...

LHG ...

32608 1 + 156051966 - 156051998 1 33

TTG ...

LLK ...

32610 15 + 76351330 - 76351485 1 156

TTG ...

LLS ...

32612 15 + 81949122 - 81949268 1 147

GTG ...

VPV ...

32614 15 + 76351304 - 76351564 1 261

GTG ...

VGL ...

32616 15 - 38500274 - 38500399 1 126

GTG ...

VAQ ...

32618 1 + 191821676 - 191821777 1 102

CTG ...

LHS ...

32620 15 - 78524851 - 78525060 1 210

GTG ...

VHN ...

32622 15 - 83308049 - 83308150 1 102

ATG ...

MSP ...

32625 15 + 81675599 - 81675664 1 66

GTG ...

VYW ...

32627 15 + 81400251 - 81400292 1 42

CTG ...

LAP ...

32629 15 - 7303921 - 7304016 1 96

GTG ...

VVS ...

32631 15 + 102326436 - 102326546 1 111

GTG ...

VEF ...

32633 1 + 191822222 - 191822368 1 147

TTG ...

LLR ...

32635 15 + 76295133 - 76295399 1 267

GTG ...

VGT ...

32637 1 + 153436108 - 153436140 1 33

CTG ...

LKM ...

32639 15 + 76295175 - 76295399 1 225

CTG ...

LGS ...

32641 15 + 76331999 - 76332079 1 81

GTG ...

VEE ...

32643 15 - 86165848 - 86165883 1 36

CTG ...

LRE ...

32646 15 - 79530155 - 79530274 1 120

CTG ...

LPM ...

32648 15 + 65857552 - 65857617 1 66

GTG ...

VER ...

32650 15 + 76334724 - 76334825 1 102

GTG ...

VLE ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5