Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

32444 15 - 98742629 - 98742661 1 33

CTG ...

LPG ...

32446 15 + 102328485 - 102328568 1 84

ATG ...

MLG ...

32448 1 - 58445333 - 58445407 1 75

ATG ...

MKL ...

32450 1 + 191822294 - 191822368 1 75

CTG ...

LYI ...

32453 15 - 102130218 - 102130412 1 195

CTG ...

LYN ...

32455 15 + 76331930 - 76332079 1 150

CTG ...

LAL ...

32457 15 + 76295719 - 76295841 1 123

CTG ...

LLE ...

32459 1 - 177796304 - 177796474 1 171

CTG ...

LVA ...

32462 15 + 102447370 - 102447465 1 96

ATG ...

MTI ...

32464 1 + 12838376 - 12838615 1 240

GTG ...

VHT ...

32466 15 + 81682007 - 81682159 1 153

GTG ...

VVD ...

32468 15 + 81682010 - 81682159 1 150

GTG ...

VDT ...

32470 15 + 102483227 - 102483292 1 66

TTG ...

LLA ...

32472 15 - 81956165 - 81956221 1 57

TTG ...

LIN ...

32475 15 + 82347933 - 82348037 1 105

GTG ...

VIP ...

32477 15 - 76871105 - 76871242 1 138

CTG ...

LGG ...

32479 15 - 81366343 - 81366480 1 138

CTG ...

LGE ...

32481 1 + 171356537 - 171356608 1 72

CTG ...

LAL ...

32483 15 - 31592777 - 31593052 1 276

CTG ...

LIA ...

32485 15 - 38491472 - 38491588 1 117

GTG ...

VGD ...

32487 1 + 134425914 - 134426099 1 186

GTG ...

VLF ...

32489 15 + 81949143 - 81949268 1 126

GTG ...

VTY ...

32491 15 - 76504098 - 76504193 1 96

CTG ...

LLH ...

32493 15 + 76295374 - 76295466 1 93

GTG ...

VGG ...

32495 1 + 134407073 - 134407138 1 66

TTG ...

LMA ...

32497 15 - 55555340 - 55555441 1 102

ATG ...

MGH ...

32499 15 + 81889308 - 81889364 1 57

GTG ...

VCG ...

32501 15 + 79029146 - 79029259 1 114

CTG ...

LSR ...

32503 15 - 81337932 - 81337994 1 63

GTG ...

VGQ ...

32505 15 + 80235880 - 80236047 1 168

CTG ...

LLR ...

32507 15 - 73605914 - 73605964 1 51

CTG ...

LVL ...

32509 15 - 36283005 - 36283124 1 120

TTG ...

LVP ...

32511 15 - 96699438 - 96699509 1 72

CTG ...

LLH ...

32513 15 + 76295722 - 76295841 1 120

CTG ...

LEW ...

32515 15 + 3274828 - 3274884 1 57

TTG ...

LLF ...

32517 15 - 83138287 - 83138463 1 177

TTG ...

LLT ...

32519 1 - 55012098 - 55012157 1 60

CTG ...

LTR ...

32521 15 - 79289568 - 79289708 1 141

CTG ...

LTG ...

32523 1 + 90610980 - 90611099 1 120

TTG ...

LEQ ...

32525 15 + 3997426 - 3997455 1 30

CTG ...

LLT ...

32527 15 - 38518892 - 38519164 1 273

GTG ...

VTR ...

32529 15 - 76347659 - 76347817 1 159

GTG ...

VFS ...

32532 1 + 75146894 - 75147055 1 162

TTG ...

LLD ...

32534 15 + 82347979 - 82348044 1 66

CTG ...

LLC ...

32536 15 + 82346025 - 82346267 1 243

CTG ...

LPE ...

32538 15 + 34272389 - 34272421 1 33

GTG ...

VPW ...

32540 15 + 74958596 - 74958682 1 87

CTG ...

LPK ...

32542 15 + 99718184 - 99718219 1 36

ATG ...

MQA ...

32544 15 - 83138081 - 83138290 1 210

CTG ...

LNS ...

32546 15 - 63943180 - 63943227 1 48

TTG ...

LQR ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5