Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

32339 15 + 65853000 - 65853137 1 138

CTG ...

LPG ...

32341 15 + 84200656 - 84200721 1 66

CTG ...

LGS ...

32343 15 - 78524851 - 78525042 1 192

GTG ...

VVI ...

32346 15 - 83367019 - 83367207 1 189

CTG ...

LDR ...

32348 1 + 171356534 - 171356608 1 75

TTG ...

LLA ...

32350 15 - 11993785 - 11993841 1 57

TTG ...

LFL ...

32352 15 + 76333022 - 76333144 1 123

CTG ...

LPN ...

32354 15 + 89569387 - 89569497 1 111

TTG ...

LSV ...

32356 15 + 102447394 - 102447465 1 72

CTG ...

LLA ...

32358 15 - 99639557 - 99639751 1 195

CTG ...

LEK ...

32360 1 + 172092246 - 172092416 1 171

GTG ...

VLT ...

32362 15 - 38500274 - 38500429 1 156

GTG ...

VKK ...

32364 15 - 81952693 - 81952767 1 75

TTG ...

LKT ...

32366 15 - 99642869 - 99642937 1 69

CTG ...

LFE ...

32368 15 - 99632074 - 99632121 1 48

TTG ...

LRH ...

32370 15 + 80234114 - 80234167 1 54

ATG ...

MGD ...

32372 15 - 38498665 - 38498817 1 153

TTG ...

LGV ...

32374 15 + 81949194 - 81949268 1 75

GTG ...

VEV ...

32376 15 + 101293255 - 101293524 1 270

ATG ...

MNG ...

32378 15 + 101293453 - 101293524 1 72

CTG ...

LLA ...

32380 15 - 78173815 - 78174096 1 282

ATG ...

MMV ...

32382 15 - 31594031 - 31594243 1 213

GTG ...

VVD ...

32384 15 - 31592628 - 31592708 1 81

GTG ...

VYG ...

32386 15 - 81956165 - 81956230 1 66

CTG ...

LQD ...

32388 15 + 76331936 - 76332079 1 144

CTG ...

LAF ...

32390 15 - 55543320 - 55543355 1 36

CTG ...

LRS ...

32393 15 - 75895645 - 75895887 1 243

GTG ...

VRS ...

32395 15 - 7303921 - 7304052 1 132

CTG ...

LPP ...

32397 15 + 96391128 - 96391193 1 66

CTG ...

LLA ...

32400 15 - 74634767 - 74634889 1 123

CTG ...

LHC ...

32402 15 + 76248531 - 76248653 1 123

TTG ...

LSG ...

32405 15 + 80235808 - 80236047 1 240

GTG ...

VTI ...

32407 15 - 79530155 - 79530424 1 270

ATG ...

MVA ...

32409 15 + 76334661 - 76334825 1 165

CTG ...

LEV ...

32411 15 + 12166214 - 12166303 1 90

GTG ...

VEP ...

32413 15 + 102445425 - 102445526 1 102

GTG ...

VLV ...

32415 15 + 102474579 - 102474671 1 93

GTG ...

VHV ...

32417 15 - 98652855 - 98652980 1 126

TTG ...

LSP ...

32419 1 + 171461585 - 171461638 1 54

TTG ...

LIV ...

32421 15 + 76333534 - 76333677 1 144

CTG ...

LLP ...

32423 15 - 98740293 - 98740472 1 180

CTG ...

LLR ...

32425 15 - 98741318 - 98741377 1 60

GTG ...

VAR ...

32427 15 + 12321540 - 12321644 1 105

GTG ...

VYP ...

32429 15 + 25622879 - 25622929 1 51

ATG ...

MAE ...

32431 15 + 97964843 - 97964902 1 60

ATG ...

MTH ...

32434 15 - 79530155 - 79530352 1 198

GTG ...

VAM ...

32436 15 + 76333213 - 76333377 1 165

TTG ...

LQG ...

32438 15 + 35296333 - 35296434 1 102

ATG ...

MFS ...

32440 15 - 83401863 - 83401955 1 93

CTG ...

LLP ...

32442 15 + 34273295 - 34273354 1 60

TTG ...

LQS ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5