Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

32235 15 + 99725732 - 99725809 1 78

GTG ...

VAE ...

32237 15 - 79327640 - 79327672 1 33

ATG ...

MTW ...

32239 15 - 79600042 - 79600107 1 66

ATG ...

MSK ...

32241 15 + 102445467 - 102445526 1 60

TTG ...

LQD ...

32243 15 + 85393466 - 85393510 1 45

TTG ...

LEI ...

32245 15 - 99772298 - 99772372 1 75

CTG ...

LQQ ...

32247 1 + 172097691 - 172097813 1 123

TTG ...

LSP ...

32249 15 + 82346040 - 82346267 1 228

TTG ...

LDA ...

32251 1 + 172129278 - 172129364 1 87

GTG ...

VEQ ...

32253 15 - 86145477 - 86145557 1 81

GTG ...

VCR ...

32255 15 + 65855476 - 65855598 1 123

CTG ...

LVA ...

32257 15 + 85393361 - 85393405 1 45

TTG ...

LEK ...

32259 15 - 83367019 - 83367054 1 36

TTG ...

LVN ...

32261 1 + 156051960 - 156051998 1 39

CTG ...

LNL ...

32263 15 - 10599716 - 10599778 1 63

GTG ...

VLC ...

32266 1 - 133719356 - 133719418 1 63

ATG ...

MCM ...

32268 15 - 81388326 - 81388367 1 42

CTG ...

LMP ...

32270 15 + 89569424 - 89569459 1 36

CTG ...

LDG ...

32272 15 - 25413548 - 25413715 1 168

GTG ...

VAA ...

32274 15 - 34443055 - 34443132 1 78

CTG ...

LVF ...

32276 15 + 76295405 - 76295485 1 81

GTG ...

VDG ...

32278 1 + 153447891 - 153447998 1 108

TTG ...

LLK ...

32280 1 - 118310959 - 118311045 1 87

GTG ...

VEL ...

32282 1 + 150442199 - 150442267 1 69

CTG ...

LTI ...

32285 15 - 74813711 - 74813878 1 168

ATG ...

MST ...

32287 15 - 51976100 - 51976141 1 42

CTG ...

LRN ...

32289 1 + 172148160 - 172148252 1 93

CTG ...

LAS ...

32291 15 - 102128524 - 102128661 1 138

CTG ...

LGE ...

32293 15 - 7242398 - 7242610 1 213

CTG ...

LRS ...

32295 15 + 85336397 - 85336606 1 210

CTG ...

LSP ...

32297 15 + 81011671 - 81011736 1 66

CTG ...

LKE ...

32299 15 + 101293270 - 101293524 1 255

GTG ...

VGA ...

32301 15 - 83367019 - 83367144 1 126

CTG ...

LRF ...

32303 15 + 99727653 - 99727826 1 174

ATG ...

MPS ...

32305 15 + 76334023 - 76334208 1 186

CTG ...

LAS ...

32307 15 - 31498575 - 31498667 1 93

GTG ...

VVT ...

32309 1 - 178333011 - 178333040 1 30

ATG ...

MGR ...

32311 15 + 99402105 - 99402173 1 69

TTG ...

LHY ...

32313 15 - 99631079 - 99631165 1 87

TTG ...

LGT ...

32315 15 + 81468154 - 81468195 1 42

GTG ...

VEC ...

32318 15 - 98742453 - 98742716 1 264

CTG ...

LKS ...

32320 15 + 76949580 - 76949615 1 36

GTG ...

VKK ...

32322 15 - 75895645 - 75895863 1 219

CTG ...

LVW ...

32324 15 + 81002571 - 81002606 1 36

CTG ...

LMK ...

32326 1 + 75143019 - 75143132 1 114

CTG ...

LRL ...

32328 15 + 25984446 - 25984487 1 42

CTG ...

LAV ...

32331 1 + 63177266 - 63177295 1 30

CTG ...

LAD ...

32333 15 + 81687008 - 81687052 1 45

CTG ...

LPL ...

32335 15 + 80963681 - 80963737 1 57

CTG ...

LAN ...

32337 15 - 74634810 - 74634902 1 93

CTG ...

LEV ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5