Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

32124 15 - 31465278 - 31465316 1 39

CTG ...

LCS ...

32126 15 - 79328090 - 79328140 1 51

ATG ...

MSS ...

32129 15 - 98093074 - 98093223 1 150

CTG ...

LCQ ...

32132 15 + 76334793 - 76334825 1 33

CTG ...

LLF ...

32134 15 + 102474576 - 102474671 1 96

GTG ...

VVH ...

32136 15 + 102445410 - 102445526 1 117

TTG ...

LAE ...

32138 15 + 82346172 - 82346267 1 96

ATG ...

MST ...

32140 15 - 31592642 - 31592722 1 81

GTG ...

VTT ...

32143 15 + 80235883 - 80236047 1 165

CTG ...

LRQ ...

32145 15 - 31592642 - 31592752 1 111

ATG ...

MPC ...

32147 15 + 74958611 - 74958682 1 72

CTG ...

LQL ...

32149 1 + 45813264 - 45813317 1 54

CTG ...

LQF ...

32151 15 - 79833911 - 79833943 1 33

CTG ...

LVK ...

32154 15 - 36283005 - 36283139 1 135

ATG ...

MAV ...

32156 1 + 191621354 - 191621464 1 111

CTG ...

LED ...

32158 1 + 179680517 - 179680633 1 117

CTG ...

LNS ...

32160 1 + 171414460 - 171414525 1 66

TTG ...

LGD ...

32163 15 - 75895728 - 75895841 1 114

TTG ...

LCL ...

32165 15 + 76904860 - 76904982 1 123

CTG ...

LRV ...

32167 15 - 79530155 - 79530385 1 231

GTG ...

VKP ...

32169 15 - 81377680 - 81377730 1 51

CTG ...

LIP ...

32171 15 + 78926752 - 78926808 1 57

CTG ...

LVE ...

32174 15 + 99126734 - 99126910 1 177

CTG ...

LGE ...

32177 15 + 81011004 - 81011075 1 72

GTG ...

VTH ...

32179 15 + 76334586 - 76334825 1 240

CTG ...

LYA ...

32181 15 - 81952693 - 81952776 1 84

GTG ...

VEA ...

32183 15 + 34273304 - 34273354 1 51

CTG ...

LCL ...

32185 15 - 7242398 - 7242580 1 183

CTG ...

LEP ...

32188 1 + 63177747 - 63177920 1 174

CTG ...

LAG ...

32190 15 - 38498665 - 38498826 1 162

GTG ...

VQE ...

32192 15 - 83401863 - 83401934 1 72

CTG ...

LQK ...

32194 15 + 102144781 - 102144888 1 108

GTG ...

VRP ...

32197 15 - 98741226 - 98741426 1 201

GTG ...

VET ...

32199 15 + 12180688 - 12180750 1 63

CTG ...

LRR ...

32201 15 + 102326514 - 102326546 1 33

GTG ...

VLN ...

32203 15 - 79530155 - 79530421 1 267

GTG ...

VAG ...

32205 15 + 76334772 - 76334825 1 54

TTG ...

LGL ...

32207 1 - 172075401 - 172075466 1 66

GTG ...

VLT ...

32209 15 + 84195805 - 84195858 1 54

TTG ...

LWK ...

32211 1 - 53760978 - 53761136 1 159

TTG ...

LLT ...

32213 1 - 135125220 - 135125411 1 192

CTG ...

LIL ...

32215 15 - 73304403 - 73304438 1 36

TTG ...

LTK ...

32218 15 + 79028846 - 79028947 1 102

GTG ...

VPA ...

32220 15 + 65857507 - 65857617 1 111

TTG ...

LTN ...

32222 15 + 102328549 - 102328635 1 87

GTG ...

VEH ...

32224 1 - 84731593 - 84731736 1 144

CTG ...

LFA ...

32226 15 - 98740293 - 98740475 1 183

ATG ...

MLL ...

32228 15 - 25413548 - 25413598 1 51

TTG ...

LEA ...

32231 15 + 81011290 - 81011364 1 75

GTG ...

VEK ...

32233 15 + 85393355 - 85393405 1 51

ATG ...

MKL ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5