Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

32018 15 + 35296390 - 35296434 1 45

ATG ...

MTF ...

32020 15 - 75895728 - 75895889 1 162

GTG ...

VCV ...

32022 15 - 78173815 - 78173988 1 174

CTG ...

LLR ...

32025 15 + 79029107 - 79029259 1 153

CTG ...

LPP ...

32027 15 - 74634810 - 74634884 1 75

CTG ...

LPF ...

32029 1 - 93629036 - 93629257 1 222

GTG ...

VWT ...

32031 1 - 172199177 - 172199239 1 63

TTG ...

LRY ...

32033 15 - 31498575 - 31498712 1 138

CTG ...

LFC ...

32035 15 - 31453302 - 31453598 1 297

CTG ...

LPL ...

32037 15 + 26409261 - 26409419 1 159

CTG ...

LRN ...

32039 15 + 82346118 - 82346267 1 150

TTG ...

LQF ...

32041 15 - 95527834 - 95527872 1 39

CTG ...

LRR ...

32044 15 + 76295112 - 76295399 1 288

CTG ...

LGP ...

32046 15 - 31498575 - 31498697 1 123

GTG ...

VHT ...

32048 15 - 83401863 - 83401976 1 114

CTG ...

LTP ...

32050 15 - 83138081 - 83138377 1 297

CTG ...

LGV ...

32052 15 + 93410719 - 93410787 1 69

CTG ...

LRD ...

32054 15 - 31498575 - 31498688 1 114

TTG ...

LCV ...

32056 15 - 99632074 - 99632151 1 78

ATG ...

MGD ...

32058 1 - 135116515 - 135116622 1 108

GTG ...

VAM ...

32060 15 - 99626166 - 99626336 1 171

CTG ...

LKE ...

32062 15 + 76351360 - 76351485 1 126

CTG ...

LFR ...

32064 1 - 172199177 - 172199251 1 75

TTG ...

LST ...

32067 1 - 144002948 - 144003019 1 72

TTG ...

LQN ...

32069 15 + 65818529 - 65818564 1 36

CTG ...

LSR ...

32071 15 + 25622737 - 25622784 1 48

ATG ...

MCH ...

32073 15 - 102128524 - 102128643 1 120

CTG ...

LHL ...

32075 15 + 34273310 - 34273354 1 45

TTG ...

LSI ...

32077 15 + 101293390 - 101293524 1 135

GTG ...

VLC ...

32079 15 - 31601597 - 31601743 1 147

CTG ...

LVT ...

32081 1 + 38044746 - 38044856 1 111

GTG ...

VAV ...

32084 15 - 35937142 - 35937261 1 120

GTG ...

VRC ...

32086 15 - 96691690 - 96691737 1 48

TTG ...

LSD ...

32088 15 - 38078367 - 38078642 1 276

TTG ...

LIR ...

32090 1 + 45817352 - 45817447 1 96

CTG ...

LAV ...

32092 15 + 80963678 - 80963737 1 60

CTG ...

LLA ...

32094 15 - 10476440 - 10476469 1 30

TTG ...

LLY ...

32096 15 - 103421172 - 103421273 1 102

ATG ...

MLG ...

32098 15 + 65815379 - 65815420 1 42

CTG ...

LVD ...

32100 15 + 76390031 - 76390066 1 36

ATG ...

MLS ...

32103 15 - 73605973 - 73606032 1 60

GTG ...

VSD ...

32105 15 + 89569336 - 89569497 1 162

GTG ...

VVP ...

32108 15 + 82347921 - 82348037 1 117

GTG ...

VFS ...

32110 15 + 74958516 - 74958713 1 198

CTG ...

LNK ...

32112 15 + 26409252 - 26409419 1 168

TTG ...

LSA ...

32114 1 + 172092303 - 172092416 1 114

CTG ...

LVV ...

32116 1 + 85905341 - 85905406 1 66

ATG ...

MSL ...

32118 15 + 76333501 - 76333677 1 177

CTG ...

LER ...

32120 15 + 81675584 - 81675664 1 81

GTG ...

VLP ...

32122 1 + 165764059 - 165764106 1 48

GTG ...

VTV ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5