Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

31909 15 - 78173815 - 78173955 1 141

CTG ...

LGP ...

31911 15 - 11993785 - 11993817 1 33

GTG ...

VIR ...

31913 15 - 81366343 - 81366489 1 147

GTG ...

VVF ...

31916 1 - 128413645 - 128413707 1 63

ATG ...

MML ...

31919 15 - 31453302 - 31453520 1 219

CTG ...

LRA ...

31921 15 - 83138081 - 83138215 1 135

TTG ...

LKR ...

31923 15 + 74958643 - 74958705 1 63

GTG ...

VPV ...

31925 15 - 31592642 - 31592755 1 114

ATG ...

MMP ...

31927 15 + 102447412 - 102447465 1 54

CTG ...

LAL ...

31929 15 + 89569418 - 89569459 1 42

CTG ...

LAL ...

31931 15 - 79833698 - 79833736 1 39

CTG ...

LDS ...

31934 15 - 99736221 - 99736301 1 81

TTG ...

LAE ...

31938 15 - 31592777 - 31592974 1 198

GTG ...

VVQ ...

31940 15 + 76334679 - 76334825 1 147

CTG ...

LAE ...

31942 15 + 81684810 - 81684983 1 174

GTG ...

VHR ...

31944 15 - 88891290 - 88891337 1 48

CTG ...

LWL ...

31946 15 - 38518965 - 38519003 1 39

TTG ...

LGI ...

31948 15 - 38078778 - 38078819 1 42

ATG ...

MAA ...

31950 15 - 98741378 - 98741428 1 51

ATG ...

MWR ...

31952 1 - 93430038 - 93430157 1 120

GTG ...

VIL ...

31955 15 + 10486106 - 10486171 1 66

TTG ...

LPG ...

31957 15 + 85359516 - 85359578 1 63

CTG ...

LLS ...

31959 15 + 81681986 - 81682159 1 174

GTG ...

VSR ...

31961 15 + 81011281 - 81011364 1 84

CTG ...

LPT ...

31963 15 + 74957791 - 74957829 1 39

TTG ...

LRT ...

31965 15 - 96691690 - 96691740 1 51

TTG ...

LLS ...

31967 15 - 37007124 - 37007165 1 42

CTG ...

LRG ...

31969 15 + 65857531 - 65857617 1 87

CTG ...

LGG ...

31971 15 + 102326517 - 102326546 1 30

CTG ...

LNK ...

31973 15 + 99725744 - 99725809 1 66

CTG ...

LRV ...

31976 15 - 38518965 - 38519063 1 99

CTG ...

LVS ...

31978 15 - 79530155 - 79530268 1 114

ATG ...

MAP ...

31980 15 + 76332995 - 76333144 1 150

GTG ...

VTV ...

31982 15 + 74958582 - 74958713 1 132

GTG ...

VNS ...

31984 15 - 38518965 - 38519207 1 243

CTG ...

LLC ...

31986 1 + 87918603 - 87918725 1 123

CTG ...

LVF ...

31988 15 - 77766699 - 77766854 1 156

CTG ...

LED ...

31990 15 + 81011320 - 81011364 1 45

CTG ...

LRS ...

31993 15 - 38518965 - 38519054 1 90

GTG ...

VPR ...

31995 15 + 65853015 - 65853137 1 123

CTG ...

LDP ...

31997 15 - 31498570 - 31498617 1 48

ATG ...

MLL ...

31999 15 + 99402120 - 99402173 1 54

TTG ...

LWR ...

32001 15 + 102485973 - 102486038 1 66

GTG ...

VRA ...

32003 1 - 191309915 - 191309995 1 81

ATG ...

MPW ...

32005 15 - 83138287 - 83138481 1 195

TTG ...

LES ...

32007 1 - 121327619 - 121327735 1 117

ATG ...

MAE ...

32010 15 + 81686954 - 81687052 1 99

GTG ...

VKE ...

32012 1 + 153433217 - 153433393 1 177

GTG ...

VTV ...

32014 15 - 10485731 - 10485793 1 63

ATG ...

MWP ...

32016 15 + 80235868 - 80236047 1 180

CTG ...

LYR ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5