Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

31802 1 + 165770782 - 165770820 1 39

GTG ...

VTP ...

31805 1 - 178330158 - 178330343 1 186

CTG ...

LGI ...

31807 15 + 76477458 - 76477541 1 84

ATG ...

MAA ...

31809 15 - 79687434 - 79687496 1 63

ATG ...

MER ...

31811 15 - 83367019 - 83367135 1 117

GTG ...

VLS ...

31813 15 + 101293354 - 101293524 1 171

GTG ...

VQA ...

31815 15 - 63937294 - 63937347 1 54

ATG ...

MTT ...

31818 15 - 86154921 - 86155070 1 150

GTG ...

VIG ...

31820 15 - 86154921 - 86155115 1 195

GTG ...

VCV ...

31822 15 + 26409171 - 26409419 1 249

GTG ...

VLN ...

31824 15 + 84197018 - 84197110 1 93

ATG ...

MFI ...

31826 15 + 82031177 - 82031266 1 90

GTG ...

VPF ...

31828 15 + 33083288 - 33083326 1 39

GTG ...

VAA ...

31830 15 + 76351405 - 76351485 1 81

TTG ...

LVA ...

31832 15 + 85336421 - 85336606 1 186

CTG ...

LLS ...

31834 15 - 99632074 - 99632133 1 60

CTG ...

LCL ...

31836 15 - 76347659 - 76347787 1 129

GTG ...

VQR ...

31838 15 - 38518892 - 38519074 1 183

CTG ...

LLL ...

31840 15 + 79691037 - 79691102 1 66

CTG ...

LTA ...

31843 15 - 38518892 - 38519176 1 285

CTG ...

LLC ...

31845 15 + 100227875 - 100227913 1 39

ATG ...

MPP ...

31847 15 - 83367019 - 83367081 1 63

GTG ...

VGG ...

31849 15 - 51865349 - 51865405 1 57

CTG ...

LAA ...

31851 15 - 78173815 - 78174045 1 231

GTG ...

VVV ...

31853 15 + 76334658 - 76334825 1 168

CTG ...

LLE ...

31855 15 + 74958553 - 74958585 1 33

ATG ...

MSI ...

31857 15 + 102326508 - 102326546 1 39

CTG ...

LNV ...

31859 15 + 43507664 - 43507714 1 51

TTG ...

LPF ...

31862 15 + 33302513 - 33302551 1 39

TTG ...

LQR ...

31864 15 - 74798531 - 74798575 1 45

GTG ...

VPW ...

31866 15 + 76710761 - 76710820 1 60

GTG ...

VVR ...

31870 15 - 102131853 - 102131894 1 42

CTG ...

LTK ...

31872 15 + 80234111 - 80234167 1 57

TTG ...

LMG ...

31874 15 + 76351451 - 76351564 1 114

CTG ...

LQP ...

31876 15 + 76332959 - 76333144 1 186

CTG ...

LEL ...

31878 15 - 79601513 - 79601542 1 30

TTG ...

LTC ...

31880 15 + 65854659 - 65854832 1 174

CTG ...

LGC ...

31882 15 - 79530155 - 79530451 1 297

GTG ...

VTG ...

31884 15 + 44432471 - 44432506 1 36

GTG ...

VRL ...

31886 15 - 79543771 - 79543836 1 66

GTG ...

VGF ...

31888 15 - 100422958 - 100423002 1 45

ATG ...

MES ...

31891 15 - 99631079 - 99631207 1 129

CTG ...

LNS ...

31893 15 - 88890725 - 88890856 1 132

GTG ...

VAS ...

31895 15 + 34283328 - 34283414 1 87

CTG ...

LLC ...

31897 15 - 31592628 - 31592747 1 120

CTG ...

LCV ...

31899 15 + 81948599 - 81948700 1 102

GTG ...

VFK ...

31901 15 + 101293378 - 101293524 1 147

CTG ...

LSL ...

31903 15 + 76333001 - 76333144 1 144

GTG ...

VEG ...

31905 15 - 78173815 - 78174000 1 186

TTG ...

LER ...

31907 15 - 98742578 - 98742616 1 39

TTG ...

LSP ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5