Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

33195 15 + 99717630 - 99718219 2 87

TTG ...

LSA ...

33197 15 - 74634810 - 74635549 2 126

CTG ...

LSL ...

33199 15 - 38514596 - 38519164 2 270

GTG ...

VTR ...

33201 15 - 83392633 - 83401922 2 81

CTG ...

LSP ...

33203 15 + 100618139 - 100619437 2 102

TTG ...

LEL ...

33205 15 + 80234529 - 80236047 2 273

TTG ...

LPR ...

33207 15 + 93410707 - 93420302 3 96

ATG ...

MKC ...

33209 15 + 34238382 - 34258681 2 42

ATG ...

MSA ...

33211 15 - 38514596 - 38519179 2 285

CTG ...

LLL ...

33213 1 - 128413645 - 128413689 1 45

GTG ...

VQE ...

33215 1 + 91526050 - 91526136 1 87

CTG ...

LWH ...

33217 15 + 12118250 - 12122076 2 159

CTG ...

LGE ...

33219 15 - 10592195 - 10593087 2 144

TTG ...

LLQ ...

33221 15 - 31496184 - 31498614 2 51

CTG ...

LLH ...

33223 15 - 99631222 - 99632154 2 93

GTG ...

VMG ...

33225 15 - 98740476 - 98741019 2 48

CTG ...

LCS ...

33248 1 - 118300804 - 118300935 1 132

CTG ...

LKN ...

33277 16 - 43880989 - 43881060 1 72

CTG ...

LTH ...

33280 16 - 11254150 - 11254179 1 30

CTG ...

LVS ...

33283 16 + 3923930 - 3923977 1 48

CTG ...

LER ...

33286 1 - 181818939 - 181818968 1 30

TTG ...

LAS ...

33288 16 - 90727299 - 90727328 1 30

CTG ...

LLP ...

33291 16 + 32884138 - 32884263 1 126

CTG ...

LNR ...

33294 16 - 15862788 - 15862907 1 120

CTG ...

LLL ...

33297 1 + 42851307 - 42851471 1 165

GTG ...

VSC ...

33300 1 + 134630644 - 134630727 1 84

CTG ...

LKL ...

33303 16 + 20686158 - 20686430 1 273

TTG ...

LSR ...

33306 16 - 59494623 - 59494766 1 144

TTG ...

LWT ...

33309 1 - 161095502 - 161095633 1 132

GTG ...

VGG ...

33312 16 + 22858081 - 22858113 1 33

CTG ...

LYL ...

33315 16 + 5050216 - 5050287 1 72

CTG ...

LLP ...

33318 1 + 105664411 - 105664641 1 231

TTG ...

LRD ...

33320 1 + 165461427 - 165461525 1 99

CTG ...

LRA ...

33322 16 - 3866563 - 3866613 1 51

CTG ...

LSR ...

33325 16 + 58732583 - 58732723 1 141

CTG ...

LWR ...

33328 16 + 94403316 - 94403351 1 36

ATG ...

MHL ...

33331 16 - 11202314 - 11202445 1 132

GTG ...

VEV ...

33334 1 + 134406370 - 134406486 1 117

CTG ...

LGT ...

33336 16 - 17872610 - 17872678 1 69

GTG ...

VQP ...

33339 16 + 92111791 - 92111925 1 135

TTG ...

LAR ...

33342 16 + 34996728 - 34996778 1 51

ATG ...

MSP ...

33345 16 - 22436434 - 22436526 1 93

ATG ...

MLK ...

33348 16 + 92111753 - 92111830 1 78

ATG ...

MLR ...

33350 16 + 8842995 - 8843054 1 60

TTG ...

LIL ...

33353 16 + 38089856 - 38089903 1 48

ATG ...

MAA ...

33356 16 - 4987454 - 4987642 1 189

CTG ...

LKD ...

33359 16 - 20703546 - 20703623 1 78

TTG ...

LLG ...

33362 16 - 5247352 - 5247567 1 216

CTG ...

LVR ...

33365 16 + 37829122 - 37829265 1 144

CTG ...

LED ...

33368 16 + 64852836 - 64852883 1 48

GTG ...

VQA ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5