Metam
ORF

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ORF Browser

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

31261 15 + 80235997 - 80236047 1 51

CTG ...

LEK ...

31263 15 + 81889332 - 81889364 1 33

CTG ...

LSC ...

31265 15 + 26409276 - 26409419 1 144

TTG ...

LVH ...

31267 15 + 76295716 - 76295841 1 126

CTG ...

LLL ...

31271 15 + 74820676 - 74820708 1 33

ATG ...

MPL ...

31273 15 + 88982960 - 88983109 1 150

ATG ...

MPC ...

31275 15 + 34283343 - 34283414 1 72

CTG ...

LPR ...

31277 15 - 81951490 - 81951561 1 72

GTG ...

VVS ...

31280 15 - 96693565 - 96693621 1 57

GTG ...

VTI ...

31282 15 + 89569402 - 89569497 1 96

GTG ...

VRS ...

31285 15 + 101293456 - 101293524 1 69

CTG ...

LAR ...

31287 15 - 38518965 - 38519060 1 96

GTG ...

VSV ...

31289 15 - 83367019 - 83367195 1 177

GTG ...

VAM ...

31291 15 + 76351376 - 76351564 1 189

CTG ...

LVR ...

31293 15 - 31498575 - 31498724 1 150

TTG ...

LLA ...

31295 15 + 52040253 - 52040534 1 282

CTG ...

LRY ...

31298 15 - 66940139 - 66940219 1 81

GTG ...

VHT ...

31301 15 + 76334778 - 76334825 1 48

CTG ...

LYP ...

31303 15 - 76347659 - 76347760 1 102

CTG ...

LCM ...

31306 15 + 74958593 - 74958682 1 90

CTG ...

LLP ...

31308 15 - 83138287 - 83138556 1 270

CTG ...

LIH ...

31310 15 + 101293444 - 101293524 1 81

CTG ...

LIA ...

31312 15 - 31592642 - 31592743 1 102

GTG ...

VSS ...

31314 15 + 79661397 - 79661444 1 48

CTG ...

LGQ ...

31316 15 - 76871105 - 76871257 1 153

ATG ...

MMP ...

31318 1 + 191621243 - 191621464 1 222

TTG ...

LNF ...

31320 15 + 65855443 - 65855598 1 156

CTG ...

LSM ...

31322 15 - 76871105 - 76871227 1 123

GTG ...

VEE ...

31324 15 - 96698178 - 96698222 1 45

TTG ...

LNQ ...

31326 15 + 102483251 - 102483292 1 42

TTG ...

LSV ...

31328 15 - 38498665 - 38498769 1 105

GTG ...

VSQ ...

31330 15 + 52040244 - 52040534 1 291

CTG ...

LEG ...

31332 15 + 81980675 - 81980755 1 81

CTG ...

LRP ...

31334 15 + 81011698 - 81011736 1 39

GTG ...

VKH ...

31336 15 - 55555340 - 55555420 1 81

GTG ...

VVS ...

31339 15 + 12183965 - 12184138 1 174

TTG ...

LRL ...

31341 15 - 10485731 - 10485820 1 90

ATG ...

MPG ...

31344 15 - 31594286 - 31594489 1 204

GTG ...

VNA ...

31346 15 + 82347863 - 82347991 1 129

CTG ...

LVS ...

31348 15 - 66938639 - 66938689 1 51

CTG ...

LEI ...

31350 15 - 98740293 - 98740469 1 177

CTG ...

LRS ...

31352 15 - 75895728 - 75895787 1 60

ATG ...

MTK ...

31354 15 + 89569411 - 89569497 1 87

TTG ...

LGP ...

31356 15 + 34283331 - 34283414 1 84

CTG ...

LCL ...

31358 15 + 35296381 - 35296434 1 54

TTG ...

LDL ...

31360 15 - 59359377 - 59359418 1 42

GTG ...

VSA ...

31363 15 + 76334044 - 76334208 1 165

CTG ...

LLI ...

31365 15 - 38518892 - 38518993 1 102

CTG ...

LLK ...

31367 15 - 36608310 - 36608534 1 225

CTG ...

LRP ...

31369 15 - 38518892 - 38519155 1 264

CTG ...

LNP ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5