Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

31149 15 + 99718163 - 99718219 1 57

TTG ...

LPR ...

31152 1 + 152771488 - 152771544 1 57

TTG ...

LRA ...

31154 15 + 81011254 - 81011364 1 111

CTG ...

LWL ...

31156 15 - 99642869 - 99642922 1 54

GTG ...

VRR ...

31158 15 + 80235862 - 80236047 1 186

CTG ...

LCL ...

31160 15 + 57912330 - 57912395 1 66

CTG ...

LGN ...

31163 15 + 65852961 - 65853137 1 177

GTG ...

VTS ...

31165 15 + 82347949 - 82348044 1 96

ATG ...

MSG ...

31167 15 - 103425427 - 103425516 1 90

CTG ...

LKS ...

31169 15 - 43263177 - 43263311 1 135

GTG ...

VST ...

31172 15 - 38500274 - 38500348 1 75

GTG ...

VLE ...

31174 1 + 133365512 - 133365697 1 186

CTG ...

LGR ...

31176 15 - 34443055 - 34443117 1 63

CTG ...

LDY ...

31178 1 - 179799203 - 179799295 1 93

CTG ...

LHF ...

31181 15 + 26409240 - 26409419 1 180

TTG ...

LWL ...

31184 15 - 76504098 - 76504184 1 87

GTG ...

VVN ...

31187 15 + 85336457 - 85336606 1 150

GTG ...

VAR ...

31189 15 + 81949203 - 81949268 1 66

GTG ...

VLT ...

31191 15 + 65853072 - 65853137 1 66

TTG ...

LEV ...

31193 15 + 82346053 - 82346286 1 234

GTG ...

VWL ...

31195 15 + 81011695 - 81011736 1 42

CTG ...

LVK ...

31197 15 + 102148193 - 102148228 1 36

GTG ...

VTS ...

31199 15 - 38518892 - 38519071 1 180

CTG ...

LLS ...

31201 15 + 82346140 - 82346286 1 147

CTG ...

LER ...

31203 1 + 75142992 - 75143132 1 141

GTG ...

VGR ...

31205 1 - 93801746 - 93801838 1 93

CTG ...

LCG ...

31207 15 + 76334068 - 76334208 1 141

CTG ...

LAL ...

31209 15 + 76295193 - 76295399 1 207

CTG ...

LAS ...

31212 15 - 103421172 - 103421309 1 138

CTG ...

LMS ...

31214 15 - 83367019 - 83367213 1 195

ATG ...

MPL ...

31216 1 + 125585175 - 125585237 1 63

TTG ...

LCI ...

31218 15 + 10486092 - 10486121 1 30

GTG ...

VAG ...

31221 15 + 101293321 - 101293524 1 204

CTG ...

LPL ...

31223 1 + 165770632 - 165770820 1 189

GTG ...

VNK ...

31225 15 - 79541030 - 79541071 1 42

TTG ...

LAL ...

31227 15 - 77766699 - 77766875 1 177

GTG ...

VRE ...

31230 15 + 12117922 - 12117951 1 30

ATG ...

MPC ...

31233 15 - 83401863 - 83401952 1 90

CTG ...

LPP ...

31235 15 + 102328547 - 102328600 1 54

ATG ...

MWS ...

31237 1 - 143615253 - 143615393 1 141

GTG ...

VAV ...

31239 15 + 76334047 - 76334208 1 162

CTG ...

LIS ...

31241 1 + 98507530 - 98507613 1 84

TTG ...

LSG ...

31244 15 + 65818463 - 65818564 1 102

CTG ...

LTF ...

31246 15 + 76710704 - 76710820 1 117

ATG ...

MSG ...

31248 15 + 76334089 - 76334208 1 120

GTG ...

VLG ...

31250 15 + 26409324 - 26409419 1 96

GTG ...

VLL ...

31252 15 + 76351442 - 76351564 1 123

ATG ...

MSR ...

31254 15 + 101293366 - 101293524 1 159

GTG ...

VLG ...

31256 15 + 76333037 - 76333144 1 108

CTG ...

LLN ...

31258 15 + 76333243 - 76333377 1 135

GTG ...

VLR ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5