Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

31371 15 + 76351310 - 76351564 1 255

TTG ...

LGP ...

31373 15 + 82345989 - 82346267 1 279

GTG ...

VCH ...

31375 15 - 98740376 - 98740423 1 48

TTG ...

LVH ...

31377 15 - 99642869 - 99642946 1 78

TTG ...

LWT ...

31379 1 + 172134009 - 172134068 1 60

TTG ...

LGH ...

31382 15 + 35302854 - 35302919 1 66

GTG ...

VFR ...

31384 15 + 76295121 - 76295399 1 279

GTG ...

VIY ...

31386 15 + 81586204 - 81586323 1 120

GTG ...

VAM ...

31388 15 - 38500274 - 38500372 1 99

GTG ...

VKC ...

31390 15 - 78173815 - 78174093 1 279

ATG ...

MVA ...

31392 15 - 35935281 - 35935325 1 45

CTG ...

LVS ...

31394 15 + 74821344 - 74821388 1 45

GTG ...

VSL ...

31396 15 + 81682097 - 81682159 1 63

CTG ...

LIH ...

31399 15 + 12166244 - 12166303 1 60

CTG ...

LTS ...

31401 15 - 81366343 - 81366396 1 54

CTG ...

LDS ...

31403 15 + 84197027 - 84197110 1 84

TTG ...

LMD ...

31405 15 - 76504098 - 76504196 1 99

CTG ...

LLL ...

31407 15 + 76333510 - 76333677 1 168

CTG ...

LHQ ...

31409 15 + 26409132 - 26409419 1 288

GTG ...

VFK ...

31411 15 - 81998106 - 81998168 1 63

CTG ...

LTG ...

31413 15 - 31594286 - 31594471 1 186

GTG ...

VAD ...

31415 15 - 31448938 - 31448982 1 45

ATG ...

MQL ...

31418 15 - 38494288 - 38494329 1 42

GTG ...

VEA ...

31420 15 - 78173815 - 78174078 1 264

CTG ...

LFG ...

31422 15 - 75901161 - 75901211 1 51

TTG ...

LTS ...

31425 15 - 10485731 - 10485868 1 138

GTG ...

VEA ...

31427 15 + 12321526 - 12321594 1 69

CTG ...

LKA ...

31430 15 + 102148181 - 102148228 1 48

ATG ...

MCQ ...

31432 15 - 99632074 - 99632163 1 90

CTG ...

LFP ...

31434 1 + 134409615 - 134409704 1 90

CTG ...

LQL ...

31437 15 - 31601597 - 31601671 1 75

ATG ...

MGA ...

31440 1 + 87918600 - 87918725 1 126

CTG ...

LLV ...

31443 1 + 87433815 - 87433922 1 108

CTG ...

LQR ...

31445 15 - 83367019 - 83367231 1 213

CTG ...

LLG ...

31447 15 + 80235835 - 80236047 1 213

ATG ...

MAP ...

31449 1 - 10037666 - 10037770 1 105

TTG ...

LAN ...

31451 15 - 83138081 - 83138263 1 183

GTG ...

VPQ ...

31453 15 + 81010998 - 81011075 1 78

GTG ...

VNV ...

31455 15 + 96378847 - 96378966 1 120

GTG ...

VQG ...

31458 15 + 76334712 - 76334825 1 114

TTG ...

LAQ ...

31460 15 - 83160368 - 83160415 1 48

TTG ...

LPS ...

31463 15 + 65845955 - 65846011 1 57

ATG ...

MLV ...

31466 15 + 102144651 - 102144845 1 195

CTG ...

LGC ...

31468 15 + 81949128 - 81949268 1 141

GTG ...

VEG ...

31470 15 + 76333246 - 76333377 1 132

CTG ...

LRQ ...

31472 15 + 84197030 - 84197110 1 81

ATG ...

MDL ...

31474 15 + 88993886 - 88993930 1 45

GTG ...

VKP ...

31476 1 - 162723171 - 162723251 1 81

TTG ...

LVF ...

31478 1 + 6244909 - 6244983 1 75

CTG ...

LLD ...

31480 15 + 81889323 - 81889364 1 42

ATG ...

MWP ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5