Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

30531 15 - 79539379 - 79539432 1 54

TTG ...

LRS ...

30534 1 + 45347751 - 45347783 1 33

TTG ...

LPI ...

30536 15 + 102326458 - 102326511 1 54

TTG ...

LLS ...

30538 15 - 31594031 - 31594174 1 144

CTG ...

LDV ...

30542 15 - 37007124 - 37007258 1 135

CTG ...

LLG ...

30545 15 - 51865349 - 51865408 1 60

CTG ...

LLA ...

30547 15 + 74958667 - 74958705 1 39

TTG ...

LDS ...

30552 15 + 12170833 - 12170961 1 129

GTG ...

VKD ...

30555 15 - 31498648 - 31498686 1 39

GTG ...

VRS ...

30558 1 - 74593824 - 74594090 1 267

CTG ...

LPP ...

30561 15 - 83138081 - 83138347 1 267

TTG ...

LQK ...

30563 15 + 84195778 - 84195858 1 81

TTG ...

LEH ...

30566 1 + 172089135 - 172089200 1 66

CTG ...

LFV ...

30568 15 + 82348006 - 82348044 1 39

TTG ...

LSQ ...

30570 15 + 93410731 - 93410787 1 57

ATG ...

MTT ...

30573 15 + 100619396 - 100619437 1 42

CTG ...

LLS ...

30576 1 - 86547531 - 86547614 1 84

TTG ...

LDE ...

30578 1 - 58445333 - 58445371 1 39

GTG ...

VRL ...

30581 15 - 38518892 - 38519086 1 195

CTG ...

LPP ...

30584 15 + 65818517 - 65818564 1 48

CTG ...

LAE ...

30587 15 - 98740987 - 98741022 1 36

ATG ...

MLC ...

30590 15 - 83582342 - 83582440 1 99

GTG ...

VLG ...

30593 1 - 143615332 - 143615367 1 36

TTG ...

LAI ...

30596 1 - 155812529 - 155812633 1 105

CTG ...

LCS ...

30598 15 - 74634666 - 74634740 1 75

CTG ...

LES ...

30601 1 - 118305138 - 118305251 1 114

TTG ...

LET ...

30603 15 + 12321591 - 12321644 1 54

ATG ...

MTA ...

30606 15 - 76504662 - 76504703 1 42

CTG ...

LSN ...

30609 15 + 82346044 - 82346286 1 243

ATG ...

MRG ...

30611 15 - 103320286 - 103320318 1 33

ATG ...

MSV ...

30614 15 + 81008291 - 81008482 1 192

CTG ...

LSL ...

30617 15 - 88890725 - 88890808 1 84

TTG ...

LMP ...

30620 15 + 102326445 - 102326546 1 102

TTG ...

LST ...

30622 15 + 82346055 - 82346267 1 213

GTG ...

VAP ...

30624 15 - 73605914 - 73605970 1 57

ATG ...

MKL ...

30627 15 - 86142678 - 86142830 1 153

GTG ...

VED ...

30630 15 - 102128524 - 102128625 1 102

CTG ...

LGR ...

30633 15 - 102130662 - 102130781 1 120

GTG ...

VDS ...

30636 15 + 99402096 - 99402173 1 78

ATG ...

MPV ...

30638 15 + 101293405 - 101293524 1 120

CTG ...

LFL ...

30641 15 + 101293411 - 101293524 1 114

CTG ...

LGG ...

30643 15 - 31592896 - 31593042 1 147

TTG ...

LQQ ...

30646 15 - 73605914 - 73605976 1 63

ATG ...

MMM ...

30648 15 - 38500274 - 38500450 1 177

GTG ...

VGD ...

30651 1 + 134425989 - 134426099 1 111

GTG ...

VVF ...

30653 15 + 81684867 - 81684983 1 117

GTG ...

VDC ...

30656 15 + 76333231 - 76333377 1 147

CTG ...

LLL ...

30659 15 + 79661383 - 79661439 1 57

CTG ...

LVF ...

30662 15 + 74958547 - 74958585 1 39

GTG ...

VKM ...

30664 15 + 102447397 - 102447465 1 69

CTG ...

LAR ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5