Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

30667 15 + 83571514 - 83571603 1 90

ATG ...

MLA ...

30670 15 + 80235976 - 80236047 1 72

CTG ...

LEA ...

30673 15 + 102445428 - 102445526 1 99

CTG ...

LVF ...

30675 15 - 79530155 - 79530364 1 210

ATG ...

MLM ...

30677 15 - 98740376 - 98740405 1 30

CTG ...

LCY ...

30679 15 + 81980657 - 81980755 1 99

CTG ...

LWS ...

30682 15 - 102118284 - 102118382 1 99

GTG ...

VGD ...

30685 15 - 88890805 - 88890861 1 57

TTG ...

LLW ...

30687 15 + 76332514 - 76332666 1 153

CTG ...

LRA ...

30689 15 + 33302510 - 33302551 1 42

CTG ...

LLQ ...

30692 15 + 76477470 - 76477541 1 72

ATG ...

MRG ...

30695 15 + 101293297 - 101293524 1 228

CTG ...

LSC ...

30697 1 - 86350776 - 86351003 1 228

ATG ...

MPK ...

30699 15 - 83367117 - 83367179 1 63

TTG ...

LAI ...

30702 1 - 178336998 - 178337054 1 57

GTG ...

VPA ...

30704 15 + 98095114 - 98095227 1 114

ATG ...

MTI ...

30707 1 + 85903110 - 85903154 1 45

TTG ...

LPR ...

30709 15 - 103421172 - 103421306 1 135

ATG ...

MSQ ...

30712 15 + 79661386 - 79661439 1 54

GTG ...

VFS ...

30714 15 - 74813711 - 74813830 1 120

ATG ...

MCL ...

30717 15 - 103317961 - 103318104 1 144

CTG ...

LRR ...

30719 15 - 98742743 - 98742775 1 33

CTG ...

LGP ...

30722 15 - 38514567 - 38514599 1 33

CTG ...

LTE ...

30724 15 + 76332487 - 76332666 1 180

GTG ...

VSG ...

30726 15 + 102331317 - 102331349 1 33

CTG ...

LGA ...

30728 15 + 76334646 - 76334825 1 180

CTG ...

LWR ...

30730 15 + 102337679 - 102337834 1 156

CTG ...

LDQ ...

30733 15 - 81998106 - 81998180 1 75

GTG ...

VAQ ...

30736 15 - 38491472 - 38491594 1 123

CTG ...

LNV ...

30738 15 - 83138164 - 83138199 1 36

CTG ...

LLR ...

30740 15 - 31592777 - 31592989 1 213

CTG ...

LGF ...

30742 15 - 36283005 - 36283127 1 123

GTG ...

VLV ...

30745 15 + 74819135 - 74819185 1 51

CTG ...

LKG ...

30748 1 - 86547531 - 86547677 1 147

GTG ...

VSS ...

30750 1 - 184832519 - 184832635 1 117

GTG ...

VKM ...

30753 15 + 65857561 - 65857617 1 57

CTG ...

LTV ...

30756 1 + 172109789 - 172109929 1 141

CTG ...

LIK ...

30759 15 + 44428208 - 44428237 1 30

CTG ...

LGR ...

30762 1 - 184822485 - 184822532 1 48

CTG ...

LIG ...

30764 15 - 34486603 - 34486659 1 57

CTG ...

LAD ...

30767 15 + 12184001 - 12184138 1 138

CTG ...

LGM ...

30769 1 + 128223471 - 128223650 1 180

GTG ...

VPQ ...

30772 15 + 76351372 - 76351485 1 114

CTG ...

LAG ...

30775 15 + 102148172 - 102148228 1 57

GTG ...

VGS ...

30778 15 - 102131853 - 102131909 1 57

GTG ...

VAS ...

30781 15 + 101293387 - 101293524 1 138

TTG ...

LVL ...

30783 15 - 75895728 - 75895832 1 105

TTG ...

LAM ...

30786 15 - 83138081 - 83138242 1 162

GTG ...

VAD ...

30788 15 - 74798531 - 74798593 1 63

CTG ...

LLE ...

30791 15 + 65853027 - 65853137 1 111

TTG ...

LSP ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5