Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

30377 14 - 52075724 - 52077438 2 39

GTG ...

VDK ...

30379 1 - 161093677 - 161093724 1 48

TTG ...

LKT ...

30381 14 - 77826397 - 77844538 4 288

ATG ...

MRG ...

30383 14 - 46814294 - 46814955 2 75

ATG ...

MMA ...

30385 14 + 34673973 - 34676962 3 117

ATG ...

MVQ ...

30388 14 + 63136502 - 63138038 2 30

CTG ...

LWY ...

30390 14 + 65980924 - 65981345 3 144

CTG ...

LTP ...

30392 14 - 26418214 - 26422452 2 66

CTG ...

LKT ...

30394 14 + 54259301 - 54261642 2 36

CTG ...

LMI ...

30396 1 - 93801649 - 93801879 1 231

CTG ...

LHL ...

30398 1 + 45335744 - 45335785 1 42

GTG ...

VVL ...

30400 14 - 8169814 - 8170205 2 51

ATG ...

MQK ...

30403 14 - 70151905 - 70153637 5 264

CTG ...

LAR ...

30406 14 - 55625911 - 55626184 2 162

CTG ...

LIL ...

30410 14 - 69706641 - 69707111 2 102

TTG ...

LST ...

30412 14 - 70401456 - 70402163 2 177

TTG ...

LAA ...

30414 14 - 37133786 - 37135209 2 33

GTG ...

VTG ...

30417 14 - 70401456 - 70402220 2 234

ATG ...

MLS ...

30419 14 - 8170416 - 8171159 2 51

TTG ...

LLL ...

30421 14 - 65078104 - 65080416 2 123

TTG ...

LLH ...

30423 14 + 54427073 - 54429728 4 234

GTG ...

VAS ...

30425 14 - 101637100 - 101640444 4 75

CTG ...

LWS ...

30427 1 + 75143067 - 75143132 1 66

CTG ...

LVW ...

30429 14 - 37130776 - 37131583 2 48

ATG ...

MAW ...

30431 14 - 37130776 - 37131673 3 138

CTG ...

LCF ...

30433 1 + 4892026 - 4892061 1 36

GTG ...

VGI ...

30436 14 - 55899244 - 55899728 2 144

GTG ...

VNS ...

30438 14 - 52183158 - 52183983 2 81

TTG ...

LYR ...

30440 14 - 77826397 - 77844529 4 279

TTG ...

LRS ...

30442 14 + 56696719 - 56697172 2 66

TTG ...

LTE ...

30444 14 - 37126085 - 37127667 2 87

TTG ...

LEL ...

30446 1 + 171270355 - 171270396 1 42

ATG ...

MAA ...

30449 14 - 37125260 - 37125922 2 93

TTG ...

LSL ...

30451 14 - 45219017 - 45219276 2 93

CTG ...

LMA ...

30453 14 - 41004062 - 41013784 3 246

CTG ...

LHY ...

30456 14 + 118970796 - 118972400 2 45

ATG ...

MAD ...

30458 14 + 51091229 - 51104817 2 36

CTG ...

LPP ...

30461 14 + 73510077 - 73511165 2 120

GTG ...

VVR ...

30463 14 - 26534589 - 26534868 2 57

ATG ...

MAA ...

30466 14 - 55659215 - 55659376 2 78

TTG ...

LRG ...

30469 14 - 37126085 - 37127661 2 81

CTG ...

LEC ...

30471 14 - 50777939 - 50781525 2 81

ATG ...

MYR ...

30474 14 + 47298376 - 47308581 3 45

GTG ...

VPR ...

30476 14 + 34674003 - 34676962 3 87

CTG ...

LTI ...

30478 14 - 69706641 - 69707141 2 132

GTG ...

VSS ...

30480 1 + 90606544 - 90606690 1 147

CTG ...

LNL ...

30483 14 + 63138069 - 63138453 2 153

CTG ...

LDK ...

30491 1 - 54988070 - 54988129 1 60

GTG ...

VQW ...

30517 1 + 191821673 - 191821777 1 105

GTG ...

VLH ...

30528 15 + 82347842 - 82347991 1 150

TTG ...

LEA ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5