Metam
ORF

Logo

ORF Browser

Selected

filters

Database

M.musculus

ORFs

No result matching criteria

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

30036 14 + 63136456 - 63138118 2 156

ATG ...

MAE ...

30038 1 + 87942392 - 87942472 1 81

GTG ...

VTK ...

30041 14 + 56696707 - 56697172 2 78

TTG ...

LFI ...

30043 14 + 54265338 - 54267020 2 81

TTG ...

LRM ...

30045 14 + 54265284 - 54267020 2 135

CTG ...

LGW ...

30047 14 - 50927894 - 50928925 4 249

TTG ...

LAP ...

30049 1 - 121566094 - 121566135 1 42

ATG ...

MEM ...

30052 1 + 151428791 - 151428874 1 84

TTG ...

LDP ...

30054 14 + 26653131 - 26653924 2 135

ATG ...

MIV ...

30057 14 - 55625911 - 55626214 2 192

GTG ...

VAS ...

30059 14 - 55662620 - 55663519 3 111

CTG ...

LTT ...

30063 14 + 76504832 - 76505268 2 30

TTG ...

LTI ...

30066 1 + 172319322 - 172319408 1 87

GTG ...

VGT ...

30068 14 - 77826397 - 77840270 3 177

CTG ...

LHF ...

30070 14 - 66028024 - 66029828 3 228

TTG ...

LRS ...

30072 1 - 118305138 - 118305272 1 135

CTG ...

LAA ...

30074 14 + 55580935 - 55581112 2 99

GTG ...

VTP ...

30077 14 + 101654020 - 101665776 4 114

GTG ...

VVA ...

30079 14 + 21234981 - 21240545 2 108

CTG ...

LRV ...

30081 14 - 33382308 - 33383925 2 69

TTG ...

LEE ...

30084 14 + 63136499 - 63138038 2 33

TTG ...

LLW ...

30086 14 - 55739284 - 55739666 3 252

ATG ...

MPT ...

30089 14 - 70421591 - 70422670 2 108

CTG ...

LGT ...

30091 14 - 40908058 - 40911172 4 252

CTG ...

LLF ...

30094 14 + 21234978 - 21240545 2 111

GTG ...

VLR ...

30098 14 + 20703341 - 20704136 2 84

ATG ...

MNS ...

30100 14 - 70707418 - 70766543 3 48

ATG ...

MNG ...

30102 14 + 26646971 - 26653124 2 72

GTG ...

VVK ...

30104 14 - 66807068 - 66807893 2 45

TTG ...

LCT ...

30106 14 - 41004062 - 41013732 3 177

GTG ...

VRS ...

30109 14 - 70421591 - 70422739 2 177

CTG ...

LLT ...

30111 14 + 31030887 - 31031838 2 117

TTG ...

LMK ...

30115 14 - 8166851 - 8169376 2 36

CTG ...

LYC ...

30117 14 - 31186648 - 31187097 2 279

TTG ...

LVN ...

30120 14 - 45219017 - 45219237 2 54

CTG ...

LHE ...

30122 14 - 52183158 - 52183995 2 93

TTG ...

LMP ...

30124 1 - 151500710 - 151500841 1 132

TTG ...

LYF ...

30126 14 - 55899244 - 55899692 2 108

TTG ...

LSS ...

30129 14 + 49180714 - 49187687 3 186

TTG ...

LVK ...

30131 14 + 55560632 - 55561280 2 42

GTG ...

VTG ...

30135 14 - 37130776 - 37131625 2 90

TTG ...

LLE ...

30137 14 + 73510080 - 73511165 2 117

GTG ...

VRR ...

30140 14 + 63136432 - 63138118 2 180

CTG ...

LTE ...

30142 14 + 65980918 - 65981345 3 150

TTG ...

LTL ...

30144 14 + 55750127 - 55751120 2 75

ATG ...

MAA ...

30146 14 + 21234996 - 21240545 2 93

GTG ...

VAT ...

30148 14 - 70422973 - 70426691 2 195

CTG ...

LSG ...

30150 14 + 54263017 - 54267020 4 300

CTG ...

LKE ...

30152 14 - 31186648 - 31187115 2 297

CTG ...

LHK ...

30154 14 + 63122524 - 63133396 3 123

TTG ...

LAW ...

Previous 262 Next

Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5