Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

29923 1 - 143702549 - 143702776 1 228

CTG ...

LLS ...

29925 1 + 153436004 - 153436090 1 87

TTG ...

LSS ...

29927 14 - 55633913 - 55634167 1 255

GTG ...

VSS ...

29929 14 + 66297428 - 66297553 1 126

GTG ...

VPR ...

29931 14 + 16260774 - 16260809 1 36

CTG ...

LPS ...

29933 14 + 16277873 - 16278040 1 168

GTG ...

VNN ...

29935 1 + 167367467 - 167367499 1 33

GTG ...

VEM ...

29937 14 + 16413585 - 16413767 1 183

CTG ...

LKK ...

29939 14 - 14116333 - 14116536 1 204

GTG ...

VAI ...

29941 14 + 34725215 - 34725268 1 54

TTG ...

LLS ...

29943 14 - 31250977 - 31251015 1 39

CTG ...

LTV ...

29945 1 - 16647951 - 16647989 1 39

CTG ...

LGS ...

29947 1 - 54990239 - 54990457 1 219

CTG ...

LPA ...

29950 14 + 120936480 - 120936509 1 30

ATG ...

MIW ...

29952 14 - 46814896 - 46814955 1 60

ATG ...

MMA ...

29954 14 + 34673973 - 34674065 1 93

ATG ...

MVQ ...

29956 14 - 26422417 - 26422452 1 36

CTG ...

LKT ...

29958 14 + 54361352 - 54361486 1 135

CTG ...

LAA ...

29960 1 - 135125220 - 135125369 1 150

GTG ...

VVR ...

29962 14 + 54468287 - 54468328 1 42

TTG ...

LGQ ...

29964 14 + 34725949 - 34726026 1 78

CTG ...

LRA ...

29967 14 + 65817298 - 65817378 1 81

TTG ...

LNS ...

29969 1 + 133365569 - 133365697 1 129

ATG ...

MLA ...

29971 14 - 70402005 - 70402163 1 159

TTG ...

LAA ...

29973 14 + 28505211 - 28505285 1 75

CTG ...

LTL ...

29975 14 - 52084154 - 52084195 1 42

TTG ...

LSS ...

29977 14 - 55629945 - 55630082 1 138

CTG ...

LFA ...

29981 1 - 143677635 - 143677697 1 63

TTG ...

LSA ...

29984 14 - 37130776 - 37131601 2 66

TTG ...

LER ...

29986 14 - 77826397 - 77844511 4 261

GTG ...

VHG ...

29989 14 + 32202139 - 32210469 2 57

ATG ...

MVR ...

29992 14 - 55662624 - 55663478 2 66

GTG ...

VWK ...

29994 14 - 66807068 - 66807938 2 90

CTG ...

LKA ...

29996 14 - 45219017 - 45219273 2 90

ATG ...

MAG ...

29999 14 + 54897049 - 54898056 3 264

GTG ...

VPW ...

30001 14 - 55625911 - 55626199 2 177

CTG ...

LRI ...

30003 14 - 37130776 - 37131622 2 87

CTG ...

LEE ...

30005 14 + 54263250 - 54265341 2 135

CTG ...

LGQ ...

30007 14 + 32295270 - 32296320 2 189

TTG ...

LMR ...

30010 14 + 32202142 - 32210469 2 54

GTG ...

VRG ...

30012 14 - 101637100 - 101640426 3 57

CTG ...

LGS ...

30014 14 + 56689074 - 56691065 2 201

GTG ...

VNV ...

30018 14 + 55746504 - 55749332 2 108

CTG ...

LWR ...

30020 1 + 87440726 - 87440926 1 201

CTG ...

LHT ...

30023 14 + 59459155 - 59461652 2 105

CTG ...

LAA ...

30026 14 - 37126085 - 37127652 2 72

TTG ...

LYT ...

30028 1 - 66801045 - 66801143 1 99

TTG ...

LSH ...

30030 14 + 54259304 - 54261642 2 33

ATG ...

MIW ...

30032 14 + 54265326 - 54267020 2 93

TTG ...

LQT ...

30034 14 - 37130776 - 37131628 2 93

TTG ...

LLL ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5