Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

29812 1 - 118300804 - 118300887 1 84

GTG ...

VKK ...

29814 14 - 54517243 - 54517317 1 75

GTG ...

VSS ...

29817 14 + 120275817 - 120275900 1 84

ATG ...

MMR ...

29819 14 - 56761849 - 56761983 1 135

TTG ...

LNM ...

29821 14 + 63133346 - 63133396 1 51

GTG ...

VVL ...

29823 14 + 65975939 - 65975989 1 51

ATG ...

MSS ...

29825 14 + 122123728 - 122123787 1 60

TTG ...

LFV ...

29827 14 + 54690104 - 54690133 1 30

TTG ...

LGS ...

29830 14 + 18278384 - 18278581 1 198

TTG ...

LYD ...

29832 14 - 54253628 - 54253711 1 84

CTG ...

LSP ...

29834 1 - 178333889 - 178333921 1 33

GTG ...

VCQ ...

29837 14 + 65731030 - 65731290 1 261

CTG ...

LVS ...

29839 14 + 65666522 - 65666569 1 48

TTG ...

LLN ...

29841 14 - 14116110 - 14116229 1 120

GTG ...

VLH ...

29843 1 + 186968375 - 186968533 1 159

TTG ...

LRR ...

29845 14 - 122891771 - 122891815 1 45

GTG ...

VPA ...

29848 14 - 52183924 - 52183992 1 69

ATG ...

MPL ...

29851 14 - 54517243 - 54517299 1 57

CTG ...

LNC ...

29853 14 - 46780156 - 46780239 1 84

GTG ...

VFP ...

29855 14 - 55581877 - 55581957 1 81

GTG ...

VTR ...

29857 14 + 66297476 - 66297553 1 78

GTG ...

VLA ...

29859 14 + 65666506 - 65666544 1 39

CTG ...

LLF ...

29861 1 - 54990239 - 54990382 1 144

TTG ...

LFE ...

29863 14 + 51888009 - 51888050 1 42

TTG ...

LMD ...

29866 14 - 54515297 - 54515422 1 126

TTG ...

LNF ...

29868 14 - 54645597 - 54645626 1 30

GTG ...

VEH ...

29872 14 + 57826564 - 57826731 1 168

GTG ...

VDR ...

29874 14 + 122133370 - 122133411 1 42

CTG ...

LKK ...

29876 14 + 65666525 - 65666569 1 45

TTG ...

LNG ...

29879 14 + 120324992 - 120325057 1 66

ATG ...

MTV ...

29881 14 + 8080437 - 8080469 1 33

GTG ...

VQE ...

29883 1 - 13579446 - 13579478 1 33

GTG ...

VCG ...

29885 14 - 70421591 - 70421635 1 45

CTG ...

LRS ...

29887 14 + 55752545 - 55752610 1 66

TTG ...

LCR ...

29889 14 - 46817324 - 46817473 1 150

TTG ...

LVV ...

29891 14 - 14116144 - 14116179 1 36

ATG ...

MPL ...

29893 14 - 65833811 - 65833921 1 111

CTG ...

LAE ...

29895 14 - 56761849 - 56761977 1 129

ATG ...

MRL ...

29897 14 - 67016498 - 67016527 1 30

CTG ...

LCK ...

29899 14 + 122008858 - 122008917 1 60

ATG ...

MDL ...

29901 14 - 8170140 - 8170175 1 36

GTG ...

VII ...

29903 14 + 54894235 - 54894498 1 264

TTG ...

LCP ...

29906 14 + 16412137 - 16412208 1 72

GTG ...

VDR ...

29908 1 - 178331345 - 178331404 1 60

TTG ...

LAS ...

29910 14 + 30549316 - 30549384 1 69

CTG ...

LKD ...

29912 14 - 55629745 - 55629840 1 96

CTG ...

LLF ...

29915 1 + 150413050 - 150413121 1 72

CTG ...

LLF ...

29917 14 + 66308942 - 66308992 1 51

GTG ...

VWF ...

29919 14 - 55581563 - 55581706 1 144

GTG ...

VGA ...

29921 14 - 55581563 - 55581694 1 132

TTG ...

LEG ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5