Metam
ORF

Logo

ORF Browser

Selected

filters

Database

M.musculus

ORFs

No result matching criteria

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

29703 14 - 101640385 - 101640426 1 42

CTG ...

LGS ...

29705 1 + 172121252 - 172121428 1 177

GTG ...

VRK ...

29707 1 + 165769894 - 165769980 1 87

CTG ...

LCV ...

29710 1 + 87379028 - 87379087 1 60

GTG ...

VFG ...

29713 14 + 16393204 - 16393371 1 168

TTG ...

LDE ...

29715 14 - 119070807 - 119070860 1 54

CTG ...

LFI ...

29718 14 - 20388296 - 20388385 1 90

ATG ...

MNR ...

29720 14 + 26646691 - 26646759 1 69

CTG ...

LYK ...

29722 14 - 73207211 - 73207249 1 39

CTG ...

LPT ...

29725 1 + 91525990 - 91526136 1 147

CTG ...

LGK ...

29727 14 - 55625911 - 55625961 1 51

CTG ...

LPN ...

29729 14 - 62760637 - 62760705 1 69

CTG ...

LPS ...

29731 14 - 8800294 - 8800335 1 42

ATG ...

MSD ...

29734 1 + 34443572 - 34443709 1 138

CTG ...

LVF ...

29736 14 - 46817324 - 46817470 1 147

GTG ...

VVC ...

29738 14 + 50870455 - 50870544 1 90

TTG ...

LVL ...

29740 1 + 59120155 - 59120268 1 114

CTG ...

LIA ...

29743 14 - 31188633 - 31188791 1 159

GTG ...

VLA ...

29745 14 + 54262779 - 54263027 1 249

GTG ...

VGL ...

29747 14 - 55627727 - 55627903 1 177

GTG ...

VSR ...

29749 14 - 55739517 - 55739603 1 87

GTG ...

VLP ...

29751 14 + 66309155 - 66309235 1 81

GTG ...

VRR ...

29753 14 + 63138409 - 63138453 1 45

ATG ...

MHW ...

29756 1 + 153907098 - 153907151 1 54

ATG ...

MLE ...

29758 1 - 181819792 - 181819989 1 198

GTG ...

VVI ...

29760 14 + 69847628 - 69847708 1 81

CTG ...

LEA ...

29762 1 + 72620102 - 72620149 1 48

CTG ...

LDA ...

29765 14 - 66807858 - 66807899 1 42

CTG ...

LTL ...

29767 14 - 65833811 - 65833930 1 120

TTG ...

LNT ...

29769 14 - 54242752 - 54242784 1 33

TTG ...

LPA ...

29771 14 - 70203295 - 70203372 1 78

TTG ...

LTQ ...

29773 14 + 101654012 - 101654104 1 93

CTG ...

LRR ...

29775 14 - 52183924 - 52183995 1 72

TTG ...

LMP ...

29777 14 - 37131530 - 37131625 1 96

TTG ...

LLE ...

29779 14 + 18280010 - 18280189 1 180

GTG ...

VAQ ...

29781 1 - 151476219 - 151476284 1 66

ATG ...

MHS ...

29783 14 - 66807858 - 66807893 1 36

TTG ...

LCT ...

29785 14 + 54894250 - 54894498 1 249

GTG ...

VGR ...

29787 14 + 16413603 - 16413767 1 165

GTG ...

VQD ...

29789 14 - 55681611 - 55681733 1 123

CTG ...

LRG ...

29791 14 + 101654039 - 101654104 1 66

CTG ...

LES ...

29793 1 - 93624573 - 93624623 1 51

CTG ...

LQS ...

29795 14 + 65666464 - 65666544 1 81

CTG ...

LTD ...

29797 14 + 30570238 - 30570405 1 168

CTG ...

LAM ...

29799 14 + 49187628 - 49187687 1 60

CTG ...

LFR ...

29801 14 - 37125260 - 37125298 1 39

GTG ...

VPL ...

29803 14 + 26638395 - 26638490 1 96

TTG ...

LTV ...

29805 14 - 52183924 - 52183986 1 63

TTG ...

LLY ...

29807 14 + 54262749 - 54263027 1 279

CTG ...

LVM ...

29810 14 - 37131530 - 37131610 1 81

CTG ...

LLV ...

Previous 259 Next

Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5