Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

29595 14 - 54515297 - 54515383 1 87

TTG ...

LPL ...

29597 14 - 101637025 - 101637066 1 42

CTG ...

LTA ...

29599 14 - 20077461 - 20077493 1 33

TTG ...

LSC ...

29601 14 + 65730991 - 65731290 1 300

GTG ...

VAL ...

29603 14 - 55630291 - 55630368 1 78

CTG ...

LAE ...

29605 14 + 8080419 - 8080469 1 51

ATG ...

MPN ...

29608 14 + 32323918 - 32323965 1 48

CTG ...

LRN ...

29611 14 + 11553542 - 11553631 1 90

CTG ...

LYG ...

29613 14 - 55681611 - 55681802 1 192

CTG ...

LRF ...

29615 14 + 54262598 - 54262840 1 243

GTG ...

VLS ...

29617 14 + 65817277 - 65817378 1 102

ATG ...

MTP ...

29620 1 + 70299719 - 70299772 1 54

GTG ...

VAS ...

29622 14 + 69847574 - 69847708 1 135

CTG ...

LSP ...

29624 14 + 63142289 - 63142339 1 51

CTG ...

LES ...

29626 14 - 119035966 - 119036046 1 81

CTG ...

LEK ...

29628 1 + 98480713 - 98480790 1 78

GTG ...

VLF ...

29630 1 + 69853392 - 69853445 1 54

CTG ...

LIK ...

29632 1 + 134593405 - 134593455 1 51

CTG ...

LCS ...

29634 14 + 49187556 - 49187687 1 132

TTG ...

LET ...

29636 1 + 85894578 - 85894670 1 93

GTG ...

VPA ...

29638 1 - 134203172 - 134203204 1 33

TTG ...

LPS ...

29640 14 + 121973632 - 121973712 1 81

TTG ...

LFH ...

29643 14 - 14114119 - 14114196 1 78

CTG ...

LES ...

29645 14 + 122107379 - 122107483 1 105

CTG ...

LPG ...

29647 1 + 153907101 - 153907151 1 51

CTG ...

LES ...

29650 1 - 93635294 - 93635347 1 54

CTG ...

LVT ...

29652 14 - 60228703 - 60228744 1 42

CTG ...

LQH ...

29655 14 - 31250977 - 31251027 1 51

TTG ...

LSP ...

29657 14 + 54265338 - 54265442 1 105

TTG ...

LRM ...

29659 14 + 47276999 - 47277055 1 57

GTG ...

VAA ...

29662 14 - 54253791 - 54253877 1 87

GTG ...

VVV ...

29664 14 + 120275850 - 120275900 1 51

CTG ...

LPD ...

29666 14 - 52183924 - 52183971 1 48

GTG ...

VLM ...

29668 14 + 52279588 - 52279626 1 39

GTG ...

VGA ...

29670 14 - 46778885 - 46779016 1 132

GTG ...

VMS ...

29672 14 + 67724579 - 67724683 1 105

TTG ...

LSD ...

29674 14 + 122137404 - 122137505 1 102

ATG ...

MRL ...

29676 14 - 55629050 - 55629136 1 87

CTG ...

LGQ ...

29678 14 + 54361337 - 54361486 1 150

GTG ...

VSL ...

29680 14 + 122889487 - 122889555 1 69

GTG ...

VKL ...

29682 1 + 153448881 - 153448934 1 54

TTG ...

LSV ...

29684 14 + 47298356 - 47298388 1 33

CTG ...

LDS ...

29686 14 + 31369829 - 31369861 1 33

TTG ...

LIE ...

29689 14 - 70426503 - 70426559 1 57

TTG ...

LCL ...

29691 14 + 34725988 - 34726026 1 39

TTG ...

LDD ...

29693 14 + 67724558 - 67724683 1 126

GTG ...

VVA ...

29695 14 + 45329912 - 45329947 1 36

TTG ...

LTA ...

29697 14 + 34673968 - 34674006 1 39

TTG ...

LRW ...

29699 14 + 16365334 - 16365402 1 69

CTG ...

LRL ...

29701 14 + 32202142 - 32202249 1 108

GTG ...

VRG ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5