Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

29489 14 - 55633913 - 55634194 1 282

GTG ...

VGL ...

29491 14 + 18278378 - 18278581 1 204

CTG ...

LHL ...

29493 14 + 30690550 - 30690609 1 60

CTG ...

LIH ...

29496 14 - 14116110 - 14116196 1 87

CTG ...

LFS ...

29498 14 + 26653859 - 26653924 1 66

ATG ...

MQC ...

29500 14 - 31250977 - 31251048 1 72

CTG ...

LAC ...

29502 1 - 86350776 - 86350964 1 189

TTG ...

LTE ...

29504 14 + 66309081 - 66309158 1 78

CTG ...

LHD ...

29506 14 + 120324998 - 120325057 1 60

GTG ...

VST ...

29508 14 + 99046449 - 99046484 1 36

GTG ...

VML ...

29510 14 + 66308765 - 66308869 1 105

CTG ...

LAG ...

29512 14 + 66308918 - 66308992 1 75

GTG ...

VAC ...

29514 14 + 18279998 - 18280189 1 192

GTG ...

VDA ...

29516 1 + 133131517 - 133131672 1 156

ATG ...

MDL ...

29518 14 - 54511942 - 54512154 1 213

TTG ...

LEV ...

29520 14 - 76010672 - 76010824 1 153

CTG ...

LDC ...

29522 14 + 69847583 - 69847708 1 126

TTG ...

LKK ...

29524 14 - 55739517 - 55739615 1 99

TTG ...

LSG ...

29526 1 + 185374151 - 185374216 1 66

GTG ...

VEL ...

29528 14 + 30558764 - 30558886 1 123

CTG ...

LFF ...

29530 14 + 54259288 - 54259323 1 36

TTG ...

LFT ...

29532 14 - 55662588 - 55662620 1 33

ATG ...

MRR ...

29534 14 - 55630572 - 55630688 1 117

CTG ...

LPY ...

29536 14 + 122107322 - 122107483 1 162

CTG ...

LSL ...

29538 14 + 65666474 - 65666569 1 96

CTG ...

LHQ ...

29540 14 - 52183924 - 52183983 1 60

TTG ...

LYR ...

29542 14 + 67724654 - 67724683 1 30

CTG ...

LID ...

29544 14 + 34729279 - 34729437 1 159

TTG ...

LEL ...

29546 14 - 56778156 - 56778287 1 132

GTG ...

VIA ...

29548 14 - 55629050 - 55629160 1 111

GTG ...

VRK ...

29550 1 + 134973834 - 134973887 1 54

TTG ...

LVT ...

29553 14 + 26653847 - 26653924 1 78

ATG ...

MSC ...

29555 14 - 26534839 - 26534868 1 30

ATG ...

MAA ...

29558 14 + 63133343 - 63133396 1 54

GTG ...

VVV ...

29560 14 - 73385145 - 73385237 1 93

CTG ...

LQS ...

29562 14 - 54577375 - 54577428 1 54

ATG ...

MLR ...

29565 14 + 16393192 - 16393371 1 180

GTG ...

VKD ...

29567 1 + 74347673 - 74347768 1 96

CTG ...

LSS ...

29570 14 + 63138376 - 63138453 1 78

CTG ...

LRA ...

29572 14 + 24490682 - 24490711 1 30

TTG ...

LRV ...

29574 14 + 67724588 - 67724683 1 96

TTG ...

LLS ...

29576 14 - 46780156 - 46780224 1 69

TTG ...

LSF ...

29578 14 + 18278420 - 18278581 1 162

CTG ...

LPK ...

29580 14 + 65666458 - 65666544 1 87

CTG ...

LRL ...

29582 14 + 122107388 - 122107483 1 96

CTG ...

LAP ...

29584 14 + 63133393 - 63133431 1 39

ATG ...

MTS ...

29587 14 + 30560605 - 30560688 1 84

GTG ...

VAT ...

29589 14 - 18238896 - 18238952 1 57

CTG ...

LCR ...

29591 14 + 21318155 - 21318187 1 33

ATG ...

MLI ...

29593 14 + 28505205 - 28505285 1 81

TTG ...

LAL ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5