Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

29384 14 - 70766508 - 70766543 1 36

ATG ...

MNG ...

29387 1 + 85894707 - 85894778 1 72

CTG ...

LIK ...

29389 14 + 34733737 - 34733811 1 75

GTG ...

VHN ...

29391 14 + 26646971 - 26647027 1 57

GTG ...

VVK ...

29393 14 - 55739517 - 55739600 1 84

CTG ...

LPS ...

29396 14 - 31250977 - 31251081 1 105

CTG ...

LAS ...

29399 14 + 30802634 - 30802675 1 42

GTG ...

VWD ...

29401 14 + 26646922 - 26647047 1 126

GTG ...

VET ...

29403 1 + 180421703 - 180421735 1 33

ATG ...

MTR ...

29406 14 + 54261647 - 54261718 1 72

CTG ...

LAP ...

29408 14 + 118970113 - 118970151 1 39

ATG ...

MQN ...

29410 1 - 178330583 - 178330612 1 30

GTG ...

VAI ...

29412 14 + 49172274 - 49172309 1 36

GTG ...

VAV ...

29414 14 + 63142283 - 63142339 1 57

TTG ...

LWL ...

29416 14 - 56761849 - 56762007 1 159

TTG ...

LLN ...

29418 14 - 56778193 - 56778243 1 51

TTG ...

LLR ...

29420 14 + 54267034 - 54267198 1 165

CTG ...

LGP ...

29422 14 + 122008870 - 122008917 1 48

CTG ...

LSS ...

29424 1 + 172118934 - 172118981 1 48

CTG ...

LPC ...

29426 14 - 37133677 - 37133757 1 81

CTG ...

LQG ...

29428 14 + 26646700 - 26646759 1 60

CTG ...

LKL ...

29430 14 + 59459126 - 59459173 1 48

CTG ...

LVL ...

29432 14 - 14116110 - 14116226 1 117

TTG ...

LHS ...

29434 14 + 28505226 - 28505285 1 60

CTG ...

LMA ...

29436 14 + 54261659 - 54261718 1 60

TTG ...

LAP ...

29438 14 - 31191322 - 31191504 1 183

TTG ...

LQL ...

29440 14 - 8169341 - 8169382 1 42

CTG ...

LQL ...

29442 1 - 153478004 - 153478135 1 132

CTG ...

LEN ...

29444 14 - 54516070 - 54516174 1 105

GTG ...

VGK ...

29447 14 + 33603124 - 33603177 1 54

CTG ...

LHW ...

29449 14 - 54253791 - 54253928 1 138

GTG ...

VWA ...

29451 14 - 37131530 - 37131607 1 78

TTG ...

LVL ...

29453 14 - 55739517 - 55739621 1 105

CTG ...

LNL ...

29455 14 + 54262842 - 54263027 1 186

CTG ...

LLG ...

29457 14 + 122107328 - 122107483 1 156

CTG ...

LLL ...

29459 14 + 21318158 - 21318187 1 30

TTG ...

LIS ...

29461 14 - 73368295 - 73368348 1 54

CTG ...

LAS ...

29463 14 + 63133387 - 63133431 1 45

GTG ...

VPM ...

29465 14 + 32085417 - 32085449 1 33

ATG ...

MAK ...

29467 14 - 14116815 - 14116922 1 108

CTG ...

LGH ...

29469 14 + 105304733 - 105304834 1 102

CTG ...

LLL ...

29471 14 + 55752575 - 55752610 1 36

CTG ...

LRA ...

29473 14 - 55633913 - 55634182 1 270

CTG ...

LLS ...

29475 1 + 79778183 - 79778341 1 159

GTG ...

VAR ...

29477 14 + 18278324 - 18278581 1 258

CTG ...

LED ...

29479 1 + 34443566 - 34443709 1 144

CTG ...

LKL ...

29481 14 + 122137374 - 122137505 1 132

TTG ...

LWI ...

29483 14 + 99046434 - 99046484 1 51

GTG ...

VGI ...

29485 14 + 65740292 - 65740405 1 114

CTG ...

LPG ...

29487 14 - 55681611 - 55681763 1 153

CTG ...

LDR ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5