Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

29270 14 - 34460567 - 34460608 1 42

ATG ...

MKI ...

29274 14 + 63134029 - 63134058 1 30

GTG ...

VDP ...

29278 14 + 25699519 - 25699602 1 84

GTG ...

VKK ...

29280 14 + 54427060 - 54427095 1 36

GTG ...

VAR ...

29282 1 + 75146846 - 75147055 1 210

CTG ...

LAA ...

29284 14 - 56778193 - 56778222 1 30

ATG ...

MWR ...

29286 14 + 50870434 - 50870544 1 111

CTG ...

LCA ...

29288 14 - 63241285 - 63241338 1 54

CTG ...

LDL ...

29291 1 + 191607901 - 191608086 1 186

CTG ...

LHS ...

29293 14 - 47276604 - 47276726 1 123

GTG ...

VTY ...

29295 1 + 128260848 - 128260892 1 45

TTG ...

LKK ...

29298 1 + 75142917 - 75143132 1 216

CTG ...

LGL ...

29300 1 + 38017814 - 38017849 1 36

ATG ...

MIL ...

29304 14 + 46832333 - 46832383 1 51

GTG ...

VVF ...

29306 14 - 20077461 - 20077523 1 63

TTG ...

LWN ...

29309 14 - 54242752 - 54242796 1 45

CTG ...

LTS ...

29311 14 - 37131530 - 37131622 1 93

CTG ...

LEE ...

29313 14 + 54427045 - 54427095 1 51

TTG ...

LHC ...

29315 14 + 54435751 - 54435897 1 147

CTG ...

LQQ ...

29317 14 - 46814896 - 46814982 1 87

TTG ...

LCI ...

29319 14 + 54262977 - 54263027 1 51

TTG ...

LGG ...

29321 14 + 76415214 - 76415258 1 45

CTG ...

LPR ...

29323 1 - 156432839 - 156432877 1 39

GTG ...

VLF ...

29325 1 + 172119332 - 172119388 1 57

GTG ...

VPL ...

29327 14 - 14116815 - 14116928 1 114

GTG ...

VAL ...

29329 14 + 65666652 - 65666711 1 60

CTG ...

LGL ...

29331 14 - 55633913 - 55634173 1 261

GTG ...

VVV ...

29333 14 - 73366317 - 73366349 1 33

CTG ...

LPT ...

29335 14 + 55561236 - 55561280 1 45

TTG ...

LET ...

29338 14 - 73385145 - 73385183 1 39

CTG ...

LPA ...

29340 14 + 16413615 - 16413767 1 153

TTG ...

LKE ...

29343 14 - 37133677 - 37133778 1 102

GTG ...

VYR ...

29345 14 + 101654023 - 101654109 1 87

GTG ...

VAA ...

29347 14 + 54261693 - 54261722 1 30

GTG ...

VEA ...

29349 14 + 122146668 - 122146712 1 45

TTG ...

LHV ...

29351 14 - 47273909 - 47273956 1 48

GTG ...

VVF ...

29354 14 + 122889496 - 122889555 1 60

GTG ...

VHC ...

29356 14 - 52183924 - 52184010 1 87

ATG ...

MSM ...

29358 1 - 164457766 - 164457870 1 105

CTG ...

LSR ...

29360 14 + 27428912 - 27429175 1 264

GTG ...

VAV ...

29363 14 - 63241285 - 63241341 1 57

ATG ...

MLD ...

29365 14 + 31251589 - 31251621 1 33

ATG ...

MAL ...

29367 14 - 55671841 - 55671900 1 60

GTG ...

VEC ...

29369 14 - 37133677 - 37133748 1 72

TTG ...

LCV ...

29371 1 + 59696061 - 59696114 1 54

CTG ...

LAV ...

29373 14 - 31188633 - 31188722 1 90

GTG ...

VTA ...

29375 14 + 66309185 - 66309235 1 51

CTG ...

LSA ...

29377 14 - 47276604 - 47276711 1 108

CTG ...

LHR ...

29379 14 - 70203295 - 70203387 1 93

CTG ...

LRP ...

29382 14 + 65980918 - 65981052 1 135

TTG ...

LTL ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5