Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

29157 1 + 91527643 - 91527783 1 141

CTG ...

LKA ...

29159 14 + 65008094 - 65008129 1 36

CTG ...

LDP ...

29162 14 - 56777787 - 56777858 1 72

TTG ...

LSA ...

29164 14 + 21240516 - 21240545 1 30

TTG ...

LTW ...

29167 14 + 65666625 - 65666711 1 87

CTG ...

LWV ...

29169 14 + 63133367 - 63133396 1 30

TTG ...

LPA ...

29171 14 - 8170140 - 8170205 1 66

ATG ...

MQK ...

29173 14 + 101654030 - 101654104 1 75

CTG ...

LSE ...

29175 14 + 63138352 - 63138453 1 102

CTG ...

LLT ...

29177 14 - 54253791 - 54253832 1 42

CTG ...

LWC ...

29179 14 + 54894310 - 54894498 1 189

CTG ...

LRS ...

29181 14 + 65974970 - 65975017 1 48

ATG ...

MHV ...

29183 14 - 65833811 - 65833900 1 90

GTG ...

VSK ...

29185 14 + 18278471 - 18278581 1 111

GTG ...

VNN ...

29187 14 + 65980924 - 65981052 1 129

CTG ...

LTP ...

29189 14 + 56697137 - 56697172 1 36

TTG ...

LLI ...

29191 14 + 65731033 - 65731290 1 258

GTG ...

VSN ...

29193 14 + 54429651 - 54429728 1 78

TTG ...

LQE ...

29195 1 - 153233481 - 153233516 1 36

TTG ...

LAE ...

29199 14 + 45329828 - 45329899 1 72

ATG ...

MSD ...

29202 14 - 52084154 - 52084201 1 48

TTG ...

LPL ...

29204 14 - 67016493 - 67016525 1 33

GTG ...

VQV ...

29207 14 + 54262911 - 54263027 1 117

GTG ...

VAS ...

29209 14 - 70408873 - 70409010 1 138

CTG ...

LAM ...

29211 14 - 55631408 - 55631515 1 108

GTG ...

VCK ...

29213 1 - 92470758 - 92470955 1 198

CTG ...

LRY ...

29215 14 - 122233503 - 122233571 1 69

CTG ...

LFL ...

29218 14 - 55625911 - 55626015 1 105

CTG ...

LTF ...

29220 1 - 156432165 - 156432257 1 93

CTG ...

LCF ...

29222 14 - 54662164 - 54662199 1 36

CTG ...

LLE ...

29226 14 - 14116333 - 14116557 1 225

GTG ...

VYQ ...

29228 1 + 75142911 - 75143132 1 222

CTG ...

LGL ...

29230 14 - 55633913 - 55634179 1 267

CTG ...

LSV ...

29232 14 - 55629745 - 55629837 1 93

CTG ...

LFD ...

29234 14 - 14116815 - 14116961 1 147

TTG ...

LTA ...

29236 14 - 55631408 - 55631527 1 120

CTG ...

LLQ ...

29238 14 - 55681611 - 55681754 1 144

TTG ...

LIH ...

29240 14 - 55634232 - 55634402 1 171

GTG ...

VSV ...

29242 14 + 79453149 - 79453193 1 45

TTG ...

LTH ...

29245 14 - 14116333 - 14116602 1 270

CTG ...

LIE ...

29247 14 + 34729285 - 34729437 1 153

TTG ...

LEQ ...

29249 14 + 56695659 - 56695772 1 114

TTG ...

LGK ...

29251 14 + 55751193 - 55751249 1 57

TTG ...

LRT ...

29254 14 + 65666498 - 65666569 1 72

GTG ...

VQT ...

29256 14 - 37125956 - 37125991 1 36

CTG ...

LWP ...

29258 14 + 49066743 - 49066772 1 30

ATG ...

MAT ...

29261 14 + 49172280 - 49172309 1 30

GTG ...

VVA ...

29263 14 + 66297419 - 66297553 1 135

GTG ...

VRT ...

29265 14 - 52183924 - 52183968 1 45

TTG ...

LMK ...

29268 14 + 122107313 - 122107483 1 171

TTG ...

LLL ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5