Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

30156 14 - 31204433 - 31206581 2 108

GTG ...

VDT ...

30159 14 - 52183158 - 52183986 2 84

TTG ...

LLY ...

30161 14 + 54261647 - 54262840 2 258

CTG ...

LAP ...

30163 14 - 70152738 - 70153648 2 42

GTG ...

VSW ...

30165 14 - 55662620 - 55663540 3 132

TTG ...

LSN ...

30167 14 - 31123754 - 31124622 3 123

TTG ...

LFD ...

30170 14 - 73366500 - 73368351 2 81

TTG ...

LLA ...

30172 14 - 70401456 - 70402115 2 129

ATG ...

MMW ...

30174 14 - 46814294 - 46814958 2 78

ATG ...

MMM ...

30176 14 - 55625911 - 55626220 2 198

GTG ...

VDV ...

30178 14 - 46814294 - 46814982 2 102

TTG ...

LCI ...

30180 14 + 105298101 - 105304834 3 198

CTG ...

LIK ...

30182 14 - 70391408 - 70392618 3 213

GTG ...

VIR ...

30184 14 - 55625911 - 55626178 2 156

CTG ...

LPD ...

30186 14 + 32295240 - 32296320 2 219

GTG ...

VVY ...

30188 14 - 8170416 - 8171150 2 42

GTG ...

VQL ...

30191 14 + 63136504 - 63138118 2 108

GTG ...

VVS ...

30193 14 + 73510128 - 73511165 2 69

TTG ...

LAV ...

30195 14 + 63122494 - 63133396 3 153

GTG ...

VHG ...

30197 14 - 31204433 - 31206596 2 123

GTG ...

VGS ...

30199 14 + 54265372 - 54267802 3 243

CTG ...

LQC ...

30201 14 - 37125260 - 37125916 2 87

TTG ...

LRL ...

30203 1 + 165763822 - 165763971 1 150

TTG ...

LLP ...

30205 14 - 52183158 - 52184004 2 102

ATG ...

MPV ...

30207 14 + 63138060 - 63138453 2 162

ATG ...

MEL ...

30209 14 - 37133677 - 37135199 3 132

CTG ...

LSI ...

30211 14 - 55739284 - 55739642 3 228

GTG ...

VPT ...

30213 14 + 55560625 - 55561280 2 48

CTG ...

LLE ...

30216 14 - 52183158 - 52184010 2 108

ATG ...

MSM ...

30218 14 - 66807068 - 66807899 2 51

CTG ...

LTL ...

30220 14 - 37126085 - 37127634 2 54

ATG ...

MSR ...

30222 14 + 59459176 - 59461652 2 84

ATG ...

MQT ...

30224 14 + 120922171 - 120923104 2 123

TTG ...

LIQ ...

30227 14 - 69706641 - 69707117 2 108

ATG ...

MTL ...

30230 14 - 55899244 - 55899677 2 93

CTG ...

LER ...

30232 14 - 66028024 - 66029801 3 201

TTG ...

LLV ...

30234 14 + 101654023 - 101665776 4 111

GTG ...

VAA ...

30236 14 + 26646965 - 26653124 2 78

ATG ...

MLV ...

30238 1 + 153433254 - 153433388 1 135

TTG ...

LQI ...

30240 14 - 37133786 - 37135248 2 72

CTG ...

LSF ...

30242 14 - 46814294 - 46814952 2 72

ATG ...

MAE ...

30244 14 - 77826397 - 77844490 4 240

TTG ...

LFF ...

30246 1 + 85894633 - 85894710 1 78

CTG ...

LQG ...

30248 14 - 70421591 - 70422691 2 129

CTG ...

LIL ...

30250 1 + 165461212 - 165461487 1 276

CTG ...

LSL ...

30253 14 - 61383237 - 61384643 2 99

TTG ...

LSI ...

30255 14 + 56689056 - 56691065 2 219

TTG ...

LEA ...

30257 14 - 70422973 - 70426643 2 147

GTG ...

VCG ...

30259 14 - 77826397 - 77844478 4 228

GTG ...

VQS ...

30261 1 + 58403669 - 58403761 1 93

CTG ...

LLL ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5