Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

28808 14 + 76415196 - 76415258 1 63

GTG ...

VWR ...

28811 14 + 18278414 - 18278581 1 168

GTG ...

VEL ...

28814 1 - 67009233 - 67009298 1 66

ATG ...

MSG ...

28816 14 - 101640385 - 101640444 1 60

CTG ...

LWS ...

28818 14 - 119002822 - 119002983 1 162

GTG ...

VRH ...

28820 14 - 52084313 - 52084345 1 33

ATG ...

MLP ...

28823 14 - 54242752 - 54242799 1 48

TTG ...

LLT ...

28825 1 + 78705260 - 78705292 1 33

TTG ...

LCQ ...

28828 14 - 55681611 - 55681709 1 99

GTG ...

VAP ...

28830 14 + 65976909 - 65976965 1 57

GTG ...

VKM ...

28832 14 - 70402005 - 70402220 1 216

ATG ...

MLS ...

28834 14 - 55630291 - 55630389 1 99

CTG ...

LGE ...

28836 14 + 49187586 - 49187687 1 102

TTG ...

LKL ...

28839 1 - 55016775 - 55016882 1 108

ATG ...

MTM ...

28841 14 + 73590833 - 73590871 1 39

CTG ...

LES ...

28843 14 - 26418139 - 26418168 1 30

ATG ...

MSS ...

28846 14 + 65971805 - 65971891 1 87

ATG ...

MAW ...

28849 14 + 49172633 - 49172878 1 246

CTG ...

LGL ...

28851 14 + 54265326 - 54265442 1 117

TTG ...

LQT ...

28853 14 - 37131530 - 37131628 1 99

TTG ...

LLL ...

28855 1 - 135125220 - 135125378 1 159

CTG ...

LTK ...

28857 14 + 54468278 - 54468328 1 51

CTG ...

LFT ...

28859 14 + 50870443 - 50870544 1 102

ATG ...

MRG ...

28862 14 + 66309140 - 66309235 1 96

GTG ...

VWS ...

28864 14 - 26418139 - 26418195 1 57

CTG ...

LSR ...

28866 14 - 46780109 - 46780159 1 51

CTG ...

LTL ...

28868 14 + 26655900 - 26655986 1 87

ATG ...

MSK ...

28871 14 + 18279974 - 18280189 1 216

CTG ...

LDL ...

28873 14 - 66824390 - 66824431 1 42

TTG ...

LPT ...

28876 14 + 18280061 - 18280189 1 129

GTG ...

VTD ...

28878 14 + 63141806 - 63141895 1 90

ATG ...

MEF ...

28880 14 + 20703341 - 20703412 1 72

ATG ...

MNS ...

28883 14 + 30951530 - 30951559 1 30

ATG ...

MEY ...

28886 14 + 54262592 - 54262840 1 249

ATG ...

MSV ...

28888 14 - 18331091 - 18331120 1 30

GTG ...

VGW ...

28891 14 + 65641303 - 65641332 1 30

CTG ...

LSP ...

28894 14 + 30977537 - 30977587 1 51

CTG ...

LQH ...

28896 14 + 54427178 - 54427249 1 72

CTG ...

LAA ...

28898 14 - 37125260 - 37125301 1 42

CTG ...

LVP ...

28900 14 - 55581563 - 55581667 1 105

GTG ...

VDF ...

28902 14 + 65731072 - 65731290 1 219

GTG ...

VHM ...

28905 14 + 47310431 - 47310463 1 33

CTG ...

LNS ...

28907 14 + 122107334 - 122107483 1 150

CTG ...

LLG ...

28909 14 + 69847613 - 69847708 1 96

CTG ...

LEE ...

28912 14 - 70375951 - 70376007 1 57

CTG ...

LWH ...

28915 14 + 66297512 - 66297553 1 42

GTG ...

VCS ...

28918 1 - 65171012 - 65171086 1 75

ATG ...

MAP ...

28920 14 - 70426503 - 70426574 1 72

CTG ...

LQA ...

28922 14 + 18279947 - 18280189 1 243

GTG ...

VAI ...

28924 14 + 65731021 - 65731290 1 270

CTG ...

LQV ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5