Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

28685 14 + 54363396 - 54363545 1 150

CTG ...

LGL ...

28690 14 - 46780109 - 46780153 1 45

CTG ...

LGL ...

28692 14 + 122107316 - 122107483 1 168

CTG ...

LLL ...

28694 1 + 172376594 - 172376635 1 42

ATG ...

MLP ...

28697 14 - 56761849 - 56761956 1 108

TTG ...

LMK ...

28699 14 + 118972419 - 118972472 1 54

CTG ...

LST ...

28701 14 + 11553554 - 11553631 1 78

ATG ...

MAS ...

28704 14 + 26653852 - 26653986 1 135

CTG ...

LQD ...

28706 14 - 65833811 - 65833882 1 72

TTG ...

LLR ...

28709 14 - 56778156 - 56778272 1 117

CTG ...

LGF ...

28711 14 - 122233459 - 122233515 1 57

CTG ...

LLS ...

28714 14 - 54253635 - 54253670 1 36

CTG ...

LAS ...

28716 14 - 54253628 - 54253879 1 252

CTG ...

LWS ...

28718 14 - 55581877 - 55581975 1 99

CTG ...

LDN ...

28721 14 - 55627727 - 55627948 1 222

CTG ...

LAE ...

28723 14 + 120275820 - 120275900 1 81

ATG ...

MRW ...

28726 14 - 8171485 - 8171520 1 36

GTG ...

VKL ...

28728 14 + 26653877 - 26653924 1 48

TTG ...

LQT ...

28730 1 + 75146897 - 75147055 1 159

CTG ...

LDQ ...

28732 14 - 56761849 - 56761998 1 150

CTG ...

LGH ...

28734 14 + 18280046 - 18280189 1 144

CTG ...

LWE ...

28736 14 + 18278333 - 18278581 1 249

GTG ...

VYM ...

28738 14 - 14116815 - 14116910 1 96

CTG ...

LDI ...

28743 14 + 30560620 - 30560688 1 69

CTG ...

LGQ ...

28745 14 + 59459129 - 59459173 1 45

GTG ...

VLR ...

28747 1 - 36146012 - 36146143 1 132

GTG ...

VRI ...

28749 14 + 34674003 - 34674065 1 63

CTG ...

LTI ...

28751 14 - 20388296 - 20388412 1 117

GTG ...

VTR ...

28753 14 + 54435761 - 54435865 1 105

ATG ...

MAT ...

28756 1 - 155812529 - 155812654 1 126

ATG ...

MLI ...

28758 14 - 55630291 - 55630410 1 120

CTG ...

LGV ...

28761 14 + 30802643 - 30802675 1 33

CTG ...

LGT ...

28764 14 - 55627727 - 55627894 1 168

CTG ...

LFP ...

28767 14 - 122233459 - 122233575 1 117

ATG ...

MSV ...

28769 1 + 191822646 - 191822819 1 174

CTG ...

LGD ...

28771 14 + 54435824 - 54435865 1 42

CTG ...

LPL ...

28773 14 + 54262809 - 54263027 1 219

CTG ...

LSA ...

28776 14 - 54242793 - 54242867 1 75

TTG ...

LPE ...

28778 14 + 54262752 - 54263027 1 276

GTG ...

VMV ...

28780 14 - 54515297 - 54515404 1 108

CTG ...

LGL ...

28784 14 - 72709908 - 72709988 1 81

ATG ...

MAA ...

28787 14 + 73590769 - 73590909 1 141

ATG ...

MQR ...

28789 14 - 119028959 - 119029009 1 51

CTG ...

LFM ...

28792 1 - 65170955 - 65170984 1 30

TTG ...

LAD ...

28794 14 + 118972413 - 118972472 1 60

GTG ...

VLL ...

28796 14 + 54897191 - 54897313 1 123

GTG ...

VPG ...

28799 14 - 55581877 - 55581924 1 48

CTG ...

LEN ...

28801 14 - 119035966 - 119036049 1 84

TTG ...

LLE ...

28803 14 - 31387641 - 31387877 1 237

CTG ...

LEA ...

28806 14 + 16260675 - 16260809 1 135

GTG ...

VQF ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5