Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

28556 14 + 66308912 - 66308992 1 81

ATG ...

MWV ...

28559 14 + 59459108 - 59459173 1 66

GTG ...

VKK ...

28563 14 + 21840523 - 21840573 1 51

TTG ...

LAL ...

28566 14 + 73590820 - 73590909 1 90

TTG ...

LIF ...

28568 14 - 73368295 - 73368351 1 57

TTG ...

LLA ...

28570 1 - 92451951 - 92452100 1 150

GTG ...

VLN ...

28572 14 + 54262989 - 54263027 1 39

CTG ...

LAT ...

28574 14 + 120923048 - 120923104 1 57

CTG ...

LEF ...

28577 14 + 50870425 - 50870544 1 120

TTG ...

LEK ...

28580 14 - 14114119 - 14114286 1 168

GTG ...

VEQ ...

28583 14 - 70426503 - 70426691 1 189

CTG ...

LSG ...

28586 14 - 66077207 - 66077284 1 78

GTG ...

VRN ...

28588 14 - 55625911 - 55626021 1 111

CTG ...

LLL ...

28590 14 + 16260714 - 16260809 1 96

CTG ...

LEQ ...

28592 1 + 87187165 - 87187212 1 48

CTG ...

LAP ...

28596 14 - 47276604 - 47276642 1 39

CTG ...

LKK ...

28598 14 - 56778156 - 56778203 1 48

TTG ...

LTS ...

28600 14 + 16413027 - 16413128 1 102

GTG ...

VKM ...

28603 14 - 18238896 - 18238955 1 60

CTG ...

LLC ...

28606 14 - 55633913 - 55634125 1 213

CTG ...

LLQ ...

28608 14 + 24492079 - 24492120 1 42

ATG ...

MQR ...

28611 14 + 16413681 - 16413767 1 87

CTG ...

LGA ...

28613 14 + 28505229 - 28505285 1 57

ATG ...

MAT ...

28615 14 + 65976915 - 65976965 1 51

ATG ...

MTA ...

28618 14 + 34673962 - 34674006 1 45

ATG ...

MAL ...

28621 1 + 134415882 - 134415950 1 69

GTG ...

VAG ...

28623 14 + 26646968 - 26647027 1 60

TTG ...

LVV ...

28625 14 + 18280079 - 18280189 1 111

CTG ...

LIE ...

28627 14 + 25699486 - 25699602 1 117

GTG ...

VFG ...

28630 14 + 52279597 - 52279626 1 30

GTG ...

VGA ...

28632 14 - 52268638 - 52268715 1 78

CTG ...

LTS ...

28635 1 - 177796304 - 177796456 1 153

TTG ...

LGS ...

28637 14 + 25698271 - 25698345 1 75

CTG ...

LSM ...

28639 14 - 31180765 - 31180923 1 159

CTG ...

LAS ...

28641 14 + 54261684 - 54261722 1 39

CTG ...

LKN ...

28643 14 - 55581563 - 55581697 1 135

CTG ...

LLE ...

28645 14 - 63526787 - 63526831 1 45

CTG ...

LAF ...

28648 14 + 73174393 - 73174425 1 33

CTG ...

LTT ...

28651 14 - 46814896 - 46814952 1 57

ATG ...

MAE ...

28653 1 + 59696028 - 59696114 1 87

TTG ...

LKK ...

28656 14 + 34736692 - 34736853 1 162

CTG ...

LIQ ...

28658 14 + 63141767 - 63141802 1 36

GTG ...

VAT ...

28660 14 - 55681611 - 55681667 1 57

GTG ...

VQM ...

28663 14 - 61384584 - 61384643 1 60

TTG ...

LSI ...

28669 14 - 41004037 - 41004177 1 141

GTG ...

VVH ...

28672 14 + 66309164 - 66309235 1 72

GTG ...

VSY ...

28674 14 + 122107319 - 122107483 1 165

CTG ...

LLS ...

28676 14 + 47298344 - 47298388 1 45

TTG ...

LPV ...

28679 14 - 76010672 - 76010809 1 138

CTG ...

LPF ...

28682 14 + 67740377 - 67740412 1 36

CTG ...

LTP ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5