Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

28926 14 + 57826657 - 57826731 1 75

CTG ...

LAQ ...

28929 14 - 56761849 - 56761989 1 141

TTG ...

LNL ...

28931 14 + 54263250 - 54263327 1 78

CTG ...

LGQ ...

28933 14 - 56761849 - 56761953 1 105

ATG ...

MKW ...

28935 14 + 65975756 - 65975914 1 159

GTG ...

VSF ...

28937 14 + 65666547 - 65666711 1 165

GTG ...

VTL ...

28940 14 + 46832285 - 46832383 1 99

GTG ...

VFL ...

28943 14 + 46832291 - 46832383 1 93

CTG ...

LVT ...

28945 14 - 55627727 - 55627978 1 252

GTG ...

VAE ...

28947 14 + 26653867 - 26653986 1 120

CTG ...

LLL ...

28949 1 + 119526284 - 119526313 1 30

ATG ...

MKA ...

28952 14 + 118972416 - 118972472 1 57

TTG ...

LLS ...

28954 1 - 51477474 - 51477584 1 111

GTG ...

VRS ...

28958 1 - 74927961 - 74928125 1 165

CTG ...

LGC ...

28961 14 + 26638406 - 26638483 1 78

GTG ...

VPP ...

28963 14 + 73590784 - 73590909 1 126

TTG ...

LIQ ...

28965 14 + 26653840 - 26653986 1 147

CTG ...

LED ...

28967 14 + 30570084 - 30570116 1 33

CTG ...

LWL ...

28970 14 + 120275796 - 120275900 1 105

TTG ...

LHG ...

28972 14 - 31204438 - 31204503 1 66

ATG ...

MAT ...

28974 14 + 66309179 - 66309235 1 57

ATG ...

MTL ...

28976 14 + 65730997 - 65731290 1 294

CTG ...

LHS ...

28978 14 + 54687042 - 54687089 1 48

ATG ...

MEE ...

28981 14 + 21775510 - 21775551 1 42

CTG ...

LTC ...

28984 1 - 119421346 - 119421396 1 51

ATG ...

MGR ...

28986 1 + 63177251 - 63177295 1 45

GTG ...

VLN ...

28988 14 - 47276604 - 47276687 1 84

GTG ...

VRE ...

28990 14 - 14116333 - 14116563 1 231

CTG ...

LKV ...

28993 14 + 65666682 - 65666711 1 30

CTG ...

LAT ...

28995 14 + 69847598 - 69847708 1 111

CTG ...

LEE ...

28997 14 + 26638361 - 26638483 1 123

GTG ...

VKA ...

28999 14 - 31180765 - 31180893 1 129

CTG ...

LPP ...

29001 1 + 150435663 - 150435932 1 270

GTG ...

VEH ...

29003 14 - 55629390 - 55629464 1 75

GTG ...

VEN ...

29005 14 - 122233459 - 122233506 1 48

GTG ...

VNV ...

29007 1 + 75142923 - 75143132 1 210

CTG ...

LGL ...

29009 14 + 26653864 - 26653986 1 123

GTG ...

VLL ...

29012 1 - 165634299 - 165634340 1 42

CTG ...

LAV ...

29015 1 + 63176936 - 63177040 1 105

ATG ...

MPP ...

29017 14 + 33603136 - 33603177 1 42

TTG ...

LAK ...

29019 14 + 73568670 - 73568720 1 51

CTG ...

LAA ...

29021 14 + 16413024 - 16413128 1 105

GTG ...

VVK ...

29023 14 + 32202178 - 32202249 1 72

CTG ...

LSG ...

29025 14 - 55630291 - 55630404 1 114

GTG ...

VLA ...

29027 14 + 16365277 - 16365402 1 126

TTG ...

LGG ...

29029 14 - 55630572 - 55630691 1 120

CTG ...

LLP ...

29031 14 + 120923057 - 120923104 1 48

TTG ...

LGT ...

29033 1 + 88216234 - 88216287 1 54

TTG ...

LAI ...

29035 14 - 52275419 - 52275508 1 90

GTG ...

VEF ...

29039 14 - 62696671 - 62696721 1 51

GTG ...

VPK ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5