Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

28163 13 - 56128280 - 56135842 2 243

GTG ...

VDE ...

28165 1 + 87297657 - 87297767 1 111

CTG ...

LVS ...

28167 13 - 49231297 - 49237496 2 108

GTG ...

VAP ...

28169 13 + 80887406 - 80889141 2 135

ATG ...

MMI ...

28171 1 + 85905329 - 85905406 1 78

ATG ...

MNV ...

28173 13 - 106997068 - 107022078 2 129

GTG ...

VMA ...

28176 13 - 54684056 - 54684447 2 144

CTG ...

LMR ...

28178 1 + 171460898 - 171460990 1 93

ATG ...

MES ...

28180 13 - 111466900 - 111487444 3 93

TTG ...

LCS ...

28182 13 - 64364160 - 64366526 3 207

CTG ...

LLL ...

28184 1 - 172081208 - 172081255 1 48

TTG ...

LCP ...

28186 13 - 49231297 - 49237559 2 171

CTG ...

LPT ...

28188 13 + 111714314 - 111714467 2 78

TTG ...

LLN ...

28190 13 - 74303950 - 74305675 3 234

CTG ...

LTL ...

28192 13 - 37983462 - 37985295 2 57

TTG ...

LAF ...

28194 13 - 54684056 - 54684423 2 117

GTG ...

VTK ...

28196 13 - 41190114 - 41194723 3 159

CTG ...

LLC ...

28199 13 - 58183277 - 58191769 2 96

CTG ...

LLD ...

28201 13 - 54684056 - 54684429 2 126

TTG ...

LAV ...

28204 13 - 64364160 - 64366523 3 204

TTG ...

LLW ...

28206 13 - 47101578 - 47102060 2 243

GTG ...

VEG ...

28208 13 + 119703636 - 119705077 3 183

ATG ...

MEI ...

28210 13 - 111466900 - 111487576 3 225

CTG ...

LTS ...

28212 1 - 24003149 - 24003217 1 69

CTG ...

LPL ...

28214 13 - 54584689 - 54585945 4 279

CTG ...

LAS ...

28216 13 - 55346877 - 55348444 3 291

CTG ...

LPL ...

28218 13 - 94253049 - 94285287 3 90

GTG ...

VPG ...

28220 13 - 58402112 - 58403291 3 147

TTG ...

LGL ...

28223 1 - 71604962 - 71605057 1 96

TTG ...

LQP ...

28225 13 + 14620742 - 14623646 2 114

GTG ...

VFL ...

28227 13 - 111466900 - 111487558 3 207

ATG ...

MSN ...

28229 13 - 34987533 - 34988294 2 48

CTG ...

LFS ...

28232 1 + 172097763 - 172097813 1 51

GTG ...

VVK ...

28234 13 - 112625422 - 112626449 3 132

CTG ...

LLL ...

28236 13 - 37983462 - 37985319 2 81

CTG ...

LVL ...

28238 1 + 45814631 - 45814720 1 90

TTG ...

LAT ...

28240 13 - 64364160 - 64365280 2 117

ATG ...

MGF ...

28242 13 - 114288763 - 114307910 3 198

ATG ...

MGI ...

28244 13 + 3564873 - 3565077 2 123

GTG ...

VTS ...

28246 13 - 56095630 - 56104409 3 228

TTG ...

LEA ...

28248 13 + 41001307 - 41004818 3 189

TTG ...

LPG ...

28251 13 - 38507050 - 38507904 2 51

ATG ...

MAR ...

28255 13 - 58183277 - 58191766 2 93

CTG ...

LDR ...

28257 13 - 114288726 - 114307855 3 180

GTG ...

VPK ...

28259 13 - 37983462 - 37985298 2 60

TTG ...

LLA ...

28261 13 - 33987233 - 33996351 2 126

ATG ...

MQL ...

28263 13 + 56735829 - 56738751 2 246

GTG ...

VYA ...

28265 13 - 52928923 - 52929488 2 51

TTG ...

LRV ...

28268 13 + 51408897 - 51418721 2 129

CTG ...

LRH ...

28270 1 - 67038491 - 67038547 1 57

ATG ...

MPI ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5