Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

28272 13 + 80887418 - 80889141 2 123

CTG ...

LKK ...

28274 13 - 49237587 - 49238876 2 114

GTG ...

VPS ...

28276 13 - 74303950 - 74305669 3 228

CTG ...

LIF ...

28278 13 + 21183913 - 21188059 2 69

TTG ...

LPN ...

28280 13 - 54684056 - 54684396 2 93

GTG ...

VGH ...

28282 13 - 64364160 - 64365412 3 249

TTG ...

LRY ...

28284 13 + 14620727 - 14623646 2 129

GTG ...

VFV ...

28286 13 - 52928923 - 52929506 2 69

GTG ...

VKT ...

28288 13 + 96391647 - 96393263 2 66

CTG ...

LTV ...

28291 13 - 56128336 - 56135862 2 207

TTG ...

LFY ...

28293 13 - 74207053 - 74208666 3 54

TTG ...

LRT ...

28295 13 - 56095630 - 56104466 3 285

GTG ...

VLP ...

28297 13 + 14620739 - 14623646 2 117

TTG ...

LVF ...

28299 13 - 52928923 - 52929584 2 147

GTG ...

VAA ...

28301 13 - 38507050 - 38507958 2 105

CTG ...

LSA ...

28304 1 - 36600077 - 36600157 1 81

GTG ...

VQF ...

28307 13 - 66928206 - 66929890 2 123

TTG ...

LKK ...

28310 13 - 64142204 - 64144293 3 282

TTG ...

LMS ...

28312 13 - 64364160 - 64365364 3 201

GTG ...

VTA ...

28314 13 - 94253049 - 94285266 2 69

TTG ...

LTA ...

28316 13 - 94208198 - 94210655 2 135

TTG ...

LCS ...

28318 13 + 85211888 - 85212778 2 66

GTG ...

VSK ...

28321 1 - 191046108 - 191046212 1 105

CTG ...

LFP ...

28324 13 - 37983462 - 37985313 2 75

TTG ...

LGF ...

28326 13 + 100109110 - 100113999 2 57

CTG ...

LPL ...

28328 13 - 58259508 - 58263277 2 84

ATG ...

MSF ...

28330 13 - 56128336 - 56135829 2 174

CTG ...

LGT ...

28332 13 - 94208198 - 94210622 2 102

CTG ...

LSM ...

28334 1 - 182276815 - 182276877 1 63

GTG ...

VST ...

28336 13 - 12187005 - 12188232 3 279

ATG ...

MSF ...

28344 1 - 74284566 - 74284676 1 111

CTG ...

LTL ...

28365 14 + 16365295 - 16365402 1 108

GTG ...

VAA ...

28370 14 - 55625911 - 55626027 1 117

CTG ...

LLL ...

28373 14 - 55634232 - 55634390 1 159

TTG ...

LAQ ...

28376 14 - 55631408 - 55631539 1 132

CTG ...

LLY ...

28378 14 - 56778156 - 56778212 1 57

GTG ...

VCT ...

28382 14 + 54265284 - 54265442 1 159

CTG ...

LGW ...

28385 14 - 56761849 - 56761923 1 75

TTG ...

LIE ...

28387 14 - 54253628 - 54253657 1 30

TTG ...

LCG ...

28390 1 + 86128195 - 86128317 1 123

GTG ...

VVG ...

28392 14 - 52275419 - 52275460 1 42

CTG ...

LQI ...

28395 1 - 181817503 - 181817568 1 66

GTG ...

VWI ...

28397 14 - 61535144 - 61535224 1 81

CTG ...

LDC ...

28401 14 - 55633913 - 55634185 1 273

CTG ...

LLL ...

28403 14 - 55581877 - 55581960 1 84

TTG ...

LVT ...

28406 14 + 49172603 - 49172878 1 276

GTG ...

VSL ...

28409 14 - 8170323 - 8170370 1 48

CTG ...

LPR ...

28412 14 + 101654020 - 101654109 1 90

GTG ...

VVA ...

28416 14 - 37131530 - 37131601 1 72

TTG ...

LER ...

28419 1 - 118300804 - 118300920 1 117

CTG ...

LRK ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5