Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

28057 1 + 152766664 - 152766783 1 120

CTG ...

LGS ...

28059 13 - 55362186 - 55362525 2 192

CTG ...

LGF ...

28061 13 + 56736009 - 56738751 2 66

GTG ...

VYE ...

28063 13 - 56095630 - 56104463 3 282

TTG ...

LPN ...

28065 13 - 64364160 - 64365259 2 96

ATG ...

MAM ...

28067 13 - 112625422 - 112626443 3 126

TTG ...

LCV ...

28069 1 + 190928550 - 190928594 1 45

ATG ...

MVT ...

28071 13 - 41194733 - 41197146 2 114

TTG ...

LDH ...

28073 13 + 111714332 - 111714467 2 60

TTG ...

LER ...

28075 13 - 33955106 - 33996297 2 60

CTG ...

LDW ...

28077 13 - 48817835 - 48819568 3 150

GTG ...

VLL ...

28079 13 - 41194733 - 41197167 2 135

ATG ...

MLS ...

28081 13 - 49238895 - 49240596 2 156

CTG ...

LCS ...

28083 13 + 56735976 - 56738751 2 99

CTG ...

LAQ ...

28085 13 - 114351519 - 114387989 2 39

CTG ...

LPF ...

28087 13 - 41194733 - 41197176 2 144

ATG ...

MKS ...

28089 13 - 37979803 - 37983424 2 36

CTG ...

LDS ...

28091 13 - 94208198 - 94210616 2 96

ATG ...

MCS ...

28093 13 - 56095630 - 56104442 3 261

TTG ...

LLA ...

28095 13 - 58259508 - 58263358 3 165

TTG ...

LCL ...

28097 13 - 49231297 - 49237505 2 117

GTG ...

VAM ...

28099 13 - 33987233 - 33996306 2 81

GTG ...

VAF ...

28102 13 - 56128336 - 56135358 3 159

GTG ...

VQP ...

28104 1 + 185345318 - 185345500 1 183

CTG ...

LPP ...

28106 1 + 45822907 - 45822978 1 72

CTG ...

LPS ...

28108 13 - 58259508 - 58264078 3 285

CTG ...

LIP ...

28110 13 - 103767027 - 103774402 3 246

GTG ...

VIQ ...

28112 13 - 64364160 - 64365394 3 231

GTG ...

VGD ...

28114 13 - 54684056 - 54684396 2 90

GTG ...

VGH ...

28116 13 - 30877571 - 30882253 2 48

GTG ...

VRR ...

28118 13 + 119703585 - 119705077 3 234

CTG ...

LSY ...

28120 1 + 6244855 - 6244983 1 129

CTG ...

LCL ...

28122 13 - 56128336 - 56135844 2 189

TTG ...

LWT ...

28126 13 + 80887454 - 80889141 2 87

ATG ...

MNM ...

28128 13 - 56074352 - 56083132 2 54

TTG ...

LAA ...

28131 13 - 49231297 - 49237508 2 120

GTG ...

VVA ...

28133 13 - 64309125 - 64312307 2 63

ATG ...

MSK ...

28135 13 - 64142204 - 64144299 3 288

CTG ...

LIL ...

28137 13 - 94208198 - 94210625 2 105

TTG ...

LLS ...

28139 13 - 56128280 - 56135875 2 276

CTG ...

LVT ...

28141 1 - 135388507 - 135388653 1 147

CTG ...

LVH ...

28143 13 - 58259508 - 58264084 3 291

GTG ...

VAL ...

28145 13 - 74316366 - 74317149 2 69

CTG ...

LHC ...

28147 1 - 178330158 - 178330238 1 81

CTG ...

LAE ...

28149 13 - 74207053 - 74208678 3 66

GTG ...

VAA ...

28151 1 + 69873216 - 69873281 1 66

CTG ...

LTS ...

28154 13 + 114818283 - 114819372 3 78

CTG ...

LAS ...

28157 13 + 59617932 - 59634477 2 75

GTG ...

VDN ...

28159 13 - 33987233 - 33996297 2 72

CTG ...

LDW ...

28161 13 + 80887409 - 80889141 2 132

ATG ...

MII ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5