Metam
ORF

Logo

ORF Browser

Selected

filters

Database

M.musculus

ORFs

No result matching criteria

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

27945 13 + 41016391 - 41017707 4 69

TTG ...

LVG ...

27947 13 - 100717673 - 100719327 2 36

TTG ...

LIL ...

27949 13 - 112625422 - 112626437 3 120

GTG ...

VCW ...

27951 13 + 55600146 - 55604150 3 78

TTG ...

LPS ...

27954 13 - 114288726 - 114307843 3 168

ATG ...

MQL ...

27956 1 - 165187965 - 165188045 1 81

CTG ...

LLW ...

27958 13 + 119703657 - 119705077 3 162

CTG ...

LSM ...

27960 13 - 112625422 - 112626446 3 129

TTG ...

LLC ...

27962 13 - 58259508 - 58264042 3 249

ATG ...

MGS ...

27964 13 - 49238895 - 49240614 2 174

ATG ...

MAH ...

27967 13 - 58259508 - 58263331 2 138

TTG ...

LLS ...

27969 1 + 191829439 - 191829555 1 117

CTG ...

LAR ...

27971 1 - 43764949 - 43765005 1 57

GTG ...

VWK ...

27974 13 - 48817835 - 48819571 3 153

ATG ...

MVL ...

27976 1 + 91525954 - 91526136 1 183

GTG ...

VSI ...

27978 13 - 54684056 - 54684423 2 120

GTG ...

VTK ...

27981 1 + 88227023 - 88227151 1 129

ATG ...

MVL ...

27984 13 - 94208198 - 94210604 2 84

CTG ...

LQD ...

27986 13 - 58259508 - 58264066 3 273

CTG ...

LGK ...

27988 13 - 49231297 - 49237445 2 57

ATG ...

MTT ...

27991 1 + 84899997 - 84900185 1 189

TTG ...

LCK ...

27993 13 - 74323087 - 74323984 3 231

GTG ...

VRD ...

27995 13 - 34993172 - 34994048 3 84

GTG ...

VTW ...

27998 13 - 58259508 - 58263286 2 93

ATG ...

MFN ...

28000 13 - 37983462 - 37985301 2 63

TTG ...

LLL ...

28002 13 - 55320150 - 55320853 5 288

CTG ...

LLQ ...

28004 13 - 58179236 - 58179568 2 174

CTG ...

LAS ...

28006 13 + 80887460 - 80889141 2 81

ATG ...

MHL ...

28008 13 - 73327430 - 73328400 2 102

CTG ...

LHG ...

28010 13 + 51408912 - 51418721 2 114

ATG ...

MQP ...

28013 1 + 172109801 - 172109929 1 129

CTG ...

LKN ...

28016 13 - 49231297 - 49237484 2 96

GTG ...

VVA ...

28018 13 - 37983462 - 37985349 3 111

GTG ...

VPE ...

28020 13 + 119703663 - 119705077 3 156

ATG ...

MVP ...

28022 1 - 151476219 - 151476287 1 69

TTG ...

LMH ...

28024 13 + 41017128 - 41017707 3 48

GTG ...

VVS ...

28026 1 + 153448878 - 153448934 1 57

ATG ...

MLS ...

28028 13 - 100720648 - 100730805 4 132

ATG ...

MRN ...

28030 13 - 55362186 - 55362456 2 123

CTG ...

LRI ...

28032 13 - 54684056 - 54684429 2 123

TTG ...

LAV ...

28034 1 + 87297660 - 87297767 1 108

GTG ...

VSC ...

28036 1 - 156466646 - 156466750 1 105

CTG ...

LSK ...

28039 13 + 18723201 - 18739469 2 54

TTG ...

LKN ...

28041 13 - 49231297 - 49237481 2 93

GTG ...

VAA ...

28043 13 - 58400400 - 58402542 2 168

CTG ...

LSL ...

28046 13 - 41186954 - 41187490 2 96

CTG ...

LCS ...

28048 13 - 94253049 - 94285251 2 54

TTG ...

LRI ...

28050 13 - 100717673 - 100719333 2 42

TTG ...

LSL ...

28052 13 - 33955106 - 33996306 2 69

GTG ...

VAF ...

28054 13 - 64142204 - 64144290 3 279

ATG ...

MSV ...

Previous 244 Next

Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5